Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12j03r
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    40   0.002
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    39   0.003
Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical pr...    31   0.70 
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    31   0.93 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    29   2.1  
U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-li...    29   2.8  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 41/209 (19%), Positives = 80/209 (38%), Gaps = 8/209 (3%)
 Frame = -2

Query: 615 CAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPG--EISYVHFAVNHPEFSEE 442
           C   +L   H ++ A CF  +    +Y  ++         G  +I Y+     +P + ++
Sbjct: 54  CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112

Query: 441 NYDKDVSIVRVTH-AIHFGPNXXXXXXXXXXXXXXXXXXVDLLGWGTTVQGGSVSDGNLH 265
            +  D++I+ + +  I F                       + GWG+    G      L 
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSM---GLRYAERLQ 169

Query: 264 KLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNTDLGAPAFFQN-----AL 100
              + + N+ +C    + +  + + + FCAG +  GG D    D G P   +       L
Sbjct: 170 AALIPIINRFDCVNSSQIYSSM-SRSAFCAGYLE-GGIDSCQGDSGGPFACRREDGAFVL 227

Query: 99  VGIVSFGKSNANDIYPVVLTSISSFTEWI 13
            G++S+G   A    P + T ++ +  WI
Sbjct: 228 AGVISWGDGCAQKKQPGIYTMVAPYLSWI 256


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
 Frame = -2

Query: 315 GWGTTVQGGSVSDGNLHKLELIVTNKENCREQYKGHDRVVTDNKFCAGLVRAGGRDYDNT 136
           GWG+T++G S+S   L ++ + + +   C        R+   +  CAG    G  D    
Sbjct: 181 GWGSTIEGSSLSAPTLREIHVPLLSTLFCSSLPNYIGRIHLPSMLCAG-YSYGKIDSCQG 239

Query: 135 DLGAPAFFQN----ALVGIVSFGKSNANDIYPVVLTSISSFTEWI 13
           D G P          L G+VS+G   A    P V  ++ S + WI
Sbjct: 240 DSGGPLMCARDGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWI 284


>Z66498-2|CAA91291.2|  419|Caenorhabditis elegans Hypothetical
           protein M195.2 protein.
          Length = 419

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 427 CEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYFC 326
           C+   +N+C  L P+   GC  PT CRNT    C
Sbjct: 275 CQTGCANSCAQLSPQPTEGC--PTNCRNTCNEVC 306


>Z70681-1|CAA94580.1|  307|Caenorhabditis elegans Hypothetical
           protein C30F2.1 protein.
          Length = 307

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 403 CHPLRPKHPAGCYYPTRCRNTPGYFC*SARMG--NYRS--RRQCI*RQ 272
           C P+RPK P G   P  CR  PG      R G  NY +   ++CI R+
Sbjct: 102 CEPIRPKCPPGPPGPPGCRGEPGPSGLPGRRGINNYETLPLKKCIWRE 149


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 427  CEHRTS--NT-CHPLRPKHPAGCYYPTRCRNTPGY 332
            CE   +  NT C P+  K P  C+   RC +TPGY
Sbjct: 1863 CEQNAAAHNTDCSPICQKQPNWCHNGGRCLDTPGY 1897


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 224
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 221 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 254


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform a protein.
          Length = 1175

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 120 QGHPSQYCRSRGHQPGPNRRRICYQSRRDHDPCTV 224
           +GH       RGH P P R R  Y +   HDPC V
Sbjct: 340 KGHVPGDANYRGHGPDPPRLRPKY-TADSHDPCNV 373


>U28941-5|AAM98026.2|  989|Caenorhabditis elegans Hypothetical
           protein F31D5.4 protein.
          Length = 989

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -3

Query: 623 SNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTLLLTIPNSL 447
           ++S +   +   TT  ++P +   +TI  T  + S+     V+       T++ T+P + 
Sbjct: 227 ASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTT 286

Query: 446 RRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 348
              T+   AS     PSTS  T++    +N  S
Sbjct: 287 ATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 319


>AY314775-1|AAQ84882.1|  971|Caenorhabditis elegans methuselah-like
           protein MTH-2 protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -3

Query: 623 SNSALVLFSPTTTTFQLLPVSMENSTILHTVAL-SLDLPVAVSPVKYLMFTLLLTIPNSL 447
           ++S +   +   TT  ++P +   +TI  T  + S+     V+       T++ T+P + 
Sbjct: 209 ASSTVTSTTTARTTTTMIPTTPTTTTIASTSTVTSIVTSTTVTSTTVPTTTVVTTVPTTT 268

Query: 446 RRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS 348
              T+   AS     PSTS  T++    +N  S
Sbjct: 269 ATSTSTSTASTTTTTPSTSTHTTTVTYSTNATS 301


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -2

Query: 630 QWFQQCAGIVLTNYHYLSTATCFHGEFYDPAYRRIIAGSSRRSEPGEISYVHFAVNHPEF 451
           ++F+Q    VLT   + S A CF   F    YR  +    R   P  +  +  +V HP  
Sbjct: 307 RFFEQAQSFVLTFQIFNSVAHCFICFFLSSQYRETVKTMIRIKTPPTVMVLESSV-HPTT 365

Query: 450 SEENYDKDVSI 418
            E +   ++ I
Sbjct: 366 RETSKTSNLVI 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,566,799
Number of Sequences: 27780
Number of extensions: 389269
Number of successful extensions: 1112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)