Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12j02r
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25415.1 68418.m03015 hypothetical protein several hypothetic... 32 0.38
At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase, pu... 31 0.87
At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase, pu... 31 1.1
At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase, pu... 28 1.2
At3g45890.1 68416.m04966 expressed protein contains Pfam domain,... 30 2.0
At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2, mitoc... 29 2.6
At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2, mitoc... 29 2.6
At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2, mitoc... 29 2.6
At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase, pu... 29 3.5
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 29 4.6
At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) / endo... 28 6.1
At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase, pu... 28 6.1
At2g36870.1 68415.m04520 xyloglucan:xyloglucosyl transferase, pu... 28 8.1
At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family pr... 28 8.1
>At5g25415.1 68418.m03015 hypothetical protein several hypothetical
proteins - Arabidopsis thaliana
Length = 334
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Frame = -1
Query: 497 QEAGSTLHYGPFPGLSGWEKAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDS----EI 330
Q AG GP+ G+ W GY N RYQ+ +T FI R+++ +
Sbjct: 88 QIAGVRSRAGPYHGVEAWFN---------GYKLNVGRYQISYTQIFIGSRLNNQDNFIQA 138
Query: 329 GR-VTP---GNGGFWEYGGFNNRPG 267
G + P G G W YG + + G
Sbjct: 139 GYIINPGFFGTGQLWTYGFWKGKDG 163
>At1g32170.1 68414.m03957 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR4) identical
to N-terminal partial sequence of xyloglucan
endotransglycosylase-related protein XTR4 GI:1244754
from [Arabidopsis thaliana]; similar to endoxyloglucan
transferase [Arabidopsis thaliana] GI:5533311
Length = 343
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -1
Query: 395 FHRYQLEWTPDFISFRIDDSEIGRV 321
FHRY + WTP I F +DD I V
Sbjct: 153 FHRYSILWTPHKIIFWVDDVPIREV 177
>At4g18990.1 68417.m02797 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein XTR4
GI:1244754 from [Arabidopsis thaliana]
Length = 357
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 395 FHRYQLEWTPDFISFRIDDSEIGRV 321
FHRY + WTP I F +DD I +
Sbjct: 161 FHRYSILWTPTKIIFWVDDVPIREI 185
>At4g14130.1 68417.m02180 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative (XTR7) almost
identical to xyloglucan endotransglycosylase-related
protein XTR7 GI:1244760 from [Arabidopsis thaliana], one
amino acid difference
Length = 289
Score = 27.9 bits (59), Expect(2) = 1.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEI 330
NFH Y + W P I F +D+ I
Sbjct: 143 NFHTYSIVWRPQHIIFLVDNLPI 165
Score = 21.4 bits (43), Expect(2) = 1.2
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -1
Query: 212 YLIINLAVGGTNGFFPDGVKNPIPKPWWNNSPMAATDFWNGQGGWLPT-WN 63
+L+ NL + N GV P +P S + D W +GG + T W+
Sbjct: 158 FLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWS 208
>At3g45890.1 68416.m04966 expressed protein contains Pfam domain,
PF04884: Protein of unknown function, DUF647
Length = 608
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 478 SVEPASCVPMCRPLRNMFLLPLDSTRSISPEAGQVPYLLYAGINQIAGQSQSPEGIFALT 657
S+ P + + CR L FLLP S++ + + Y L+ G+ IA Q G+ A
Sbjct: 180 SLTPENLLAQCRNLLTQFLLPEGFPNSVTSD--YLDYSLWRGVQGIASQI---SGVLATQ 234
Query: 658 STL 666
S L
Sbjct: 235 SLL 237
>At3g17240.3 68416.m02203 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 507
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 440 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 300
KA+++ RN + T+ R+ T F S DD+++ + G GG+
Sbjct: 10 KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56
>At3g17240.2 68416.m02204 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 127
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 440 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 300
KA+++ RN + T+ R+ T F S DD+++ + G GG+
Sbjct: 10 KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56
>At3g17240.1 68416.m02202 dihydrolipoamide dehydrogenase 2,
mitochondrial / lipoamide dehydrogenase 2 (MTLPD2)
nearly identical to GB:AAF34796 [gi:6984216] from
[Arabidopsis thaliana]; alternative splice form exists
Length = 507
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -1
Query: 440 KAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGF 300
KA+++ RN + T+ R+ T F S DD+++ + G GG+
Sbjct: 10 KAYFLTRNISNSPTDAFRFSFSLTRGFASSGSDDNDVVIIGGGPGGY 56
>At3g23730.1 68416.m02984 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endotransglycosylase-related protein
GI:1244760 from [Arabidopsis thaliana]
Length = 291
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEI 330
NFH Y L W P I F +D+ I
Sbjct: 142 NFHTYSLVWRPQHIIFMVDNVPI 164
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/99 (23%), Positives = 44/99 (44%)
Frame = -2
Query: 589 NTAPGQLLGKSTLSNPEATKTCSSTVYTLVHRKLVRHCTTDLSPD*ADGKKRTGSEGTAP 410
+T P LG+ T+S ++ + +S LVH ++ + P + K++ + T P
Sbjct: 394 STIPSADLGQVTVSQTKSEEFDNSLKSFLVHSEMSTQNADETPPRQREKKRKPLLDITRP 453
Query: 409 DTTLISIVTNWNGHQIS*ALELTTLRSVVSLLEMVAFGN 293
D L S +W H + E ++ +++L GN
Sbjct: 454 DVLLAS---SWLDHGLGIVKETGSMSDALAVLLGDDIGN 489
>At4g30270.1 68417.m04303 MERI-5 protein (MERI-5) (MERI5B) /
endo-xyloglucan transferase / xyloglucan
endo-1,4-beta-D-glucanase (SEN4) identical to
endo-xyloglucan transferase gi:944810, SP|P24806 MERI-5
protein precursor (Endo-xyloglucan transferase)
(Xyloglucan endo-1,4-beta-D-glucanase) {Arabidopsis
thaliana}
Length = 269
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEI 330
NFH Y + W P I +DD+ I
Sbjct: 139 NFHTYSILWNPQRIILTVDDTPI 161
>At3g48580.1 68416.m05304 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
endoxyloglucan transferase EXGT-A4 GI:5139002 from
[Arabidopsis thaliana]
Length = 277
Score = 28.3 bits (60), Expect = 6.1
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGRVTPGNGGFWEYGGFNN---RPGIHNPWRYGSKMAP 228
++H Y W P+ + F +DD+ I RV N + Y + N K P
Sbjct: 147 DYHSYSFLWNPNQLVFYVDDTPI-RVYSKNPDVY-YPSVQTMFLMGSVQNGSIIDPKQMP 204
Query: 227 FDQKFYLIINLAVGGTNGFFPDGVKNPIPKPWWNNSPMAATD 102
+ KF + G F K PK WWN +++ +
Sbjct: 205 YIAKFQA---SKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKE 243
>At2g36870.1 68415.m04520 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
cellulase (xyloglucan endo-transglycosylase) GI:311835
from [Tropaeolum majus]
Length = 299
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 398 NFHRYQLEWTPDFISFRIDDSEIGR 324
+FH Y + W+P I F +DD I R
Sbjct: 164 DFHHYAILWSPREIIFLVDDIPIRR 188
>At1g51350.1 68414.m05775 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 666
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 630 LALARNLVDACIQQIRHLASFWGNRPCRIQRQQKHVPQ 517
LAL RNLVD CI I + G + RQ + PQ
Sbjct: 513 LALLRNLVDGCISSIEFVFDEDGLILDTVGRQLRKAPQ 550
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,724,235
Number of Sequences: 28952
Number of extensions: 480284
Number of successful extensions: 1330
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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