Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i14f
         (629 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    25   0.52 
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   4.9  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   4.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   6.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 497 NLLTLPSGNRTPCPKYCLTSSQAFVPGSK 411
           N  +L   NR   P+ C+ + QA+ PGS+
Sbjct: 734 NATSLVESNRN-VPQKCIFNGQAYFPGSR 761


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 570 YPWMCDSIKFTSFFYIIKNNFAKF*SVNSSIR--EQNSMSK 454
           YP M  S K  + F I+    A+F ++N+ I    QNS ++
Sbjct: 168 YPRMLISTKLLAHFLILTVLKARFEAINNIIDSIRQNSQTR 208


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 570 YPWMCDSIKFTSFFYIIKNNFAKF*SVNSSIR--EQNSMSK 454
           YP M  S K  + F I+    A+F ++N+ I    QNS ++
Sbjct: 168 YPRMLISTKLLAHFLILTVLKARFEAINNIIDSIRQNSQTR 208


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 422 PGSKTFRATSSASITAIPCSLNMESTVLL 336
           PGS T  ATS A + + P  +  ++   +
Sbjct: 103 PGSSTTSATSGAVMASPPMPITTDNVAAI 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,194
Number of Sequences: 336
Number of extensions: 2988
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)