Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i14f
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    99   3e-22
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    28   0.97 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    28   0.97 
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    26   3.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   3.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   5.2  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   5.2  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.8  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    25   9.0  

>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score =   99 bits (238), Expect = 3e-22
 Identities = 49/98 (50%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
 Frame = +1

Query: 298 MFIVGLTGGLATGKSTVLSIFKE-HGIAVIDADEVARKVLEPGTKAWLEVKQYFGHGVLF 474
           M I+GLTG +ATGKSTV   F+E + I +IDAD +ARKV+EP T   +++++ FG+ VL 
Sbjct: 1   MLILGLTGSIATGKSTVSREFQEKYHIKIIDADVLARKVVEPNTPCLIKIQKEFGNEVLH 60

Query: 475 PDGRVNRLKLGEIVFDDIEKRRKLNAITHPRIQSAMIR 588
            DG +NR KLG+ VF D  KR  LN+I HP ++  M++
Sbjct: 61  EDGTLNRAKLGQAVFQDAGKRSLLNSIIHPAVRLEMLK 98


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 400 ARKVLEPGTKAWLEVKQYFGHG 465
           +RK LEP +  W++    FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 400 ARKVLEPGTKAWLEVKQYFGHG 465
           +RK LEP +  W++    FGHG
Sbjct: 347 SRKALEPVSLKWIDTASKFGHG 368


>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/61 (21%), Positives = 25/61 (40%)
 Frame = +2

Query: 80  NAVSSRSYITLIVYLFKFVVCRVDESDFFSVVEVF*CNVMHSVQETNPVSTNLIHSKTIN 259
           NA      +  +VY F+      D+  + S ++ +   +   +QE+NP    +     I 
Sbjct: 57  NAEEGTETVNNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIG 116

Query: 260 F 262
           F
Sbjct: 117 F 117


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 527 ISSKTISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAIPCSLNMES 348
           +SS T SPS   L++ S + +       TSS + +  S +  +T  +S T    SL + S
Sbjct: 580 LSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISS 639

Query: 347 TVLL 336
           + ++
Sbjct: 640 SSII 643


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 283 RQERNMFIVGLTGGLATGKSTVLSIFKEHGIAVIDADEVARKVLEPGTKAWLEVKQ 450
           + +RN+F+  + G  + GK+ +LS F  +    +  + V   V    T+ +L + +
Sbjct: 416 KYDRNVFLCFVVGSKSCGKTALLSSFINNNTNRLTPNTVVNSVEFQSTQRYLVLSE 471


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 295 NMFIVGLTGGLATGKSTVLSIFKEHGIAVIDADE 396
           N  +V + G  +TGKST+L+       +V+DA +
Sbjct: 38  NYHVVAVLGSQSTGKSTLLNNLFGTSFSVMDASK 71


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 515 TISPSFNLLTLPSGNRTPCPKYCLTSSQAFVPGSKTFRATSSASITAI 372
           +++PS +L   PS N  P P   +T+S A    +  F  +SS+S+ ++
Sbjct: 177 SVTPSASLYKQPSFNSNPAP---ITTSSA--THTSQFSTSSSSSVNSV 219


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 526 IEKRRKLNAITHPRIQSAMIRIAFSFFSLV 615
           ++KR+    IT+  +  +M+ I F+F SL+
Sbjct: 48  LQKRQLYEIITYVTLHLSMLHIVFNFVSLL 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,512
Number of Sequences: 5004
Number of extensions: 48646
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)