Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08r
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical p...    29   3.6  
AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose tr...    29   3.6  
AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine r...    28   6.3  

>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 550 TFSILFTYLLKIKNKNTGYIRKDKNMDFFVTVSI*LKQSYVFFF 681
           TF +++   L     N   +   KN   F+T+S+ L  SY+FFF
Sbjct: 44  TFLVIYKIFLIYSKTNWEQLEPGKNKHVFLTLSLSLIFSYLFFF 87


>Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical
           protein C50F4.14 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 417 YISVNLTITYSCLCTYLCLHNNLD*KMIDCC 509
           Y+  +LT  ++ +CTYL L      + I CC
Sbjct: 130 YVGRSLTTVFNVVCTYLILGQKTSGQAIGCC 160


>AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose
           transporter protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 417 YISVNLTITYSCLCTYLCLHNNLD*KMIDCC 509
           Y+  +LT  ++ +CTYL L      + I CC
Sbjct: 130 YVGRSLTTVFNVVCTYLILGQKTSGQAIGCC 160


>AC006675-10|AAK84551.2|  280|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 57 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 654 VKTELCFFFQKHRIYVPFQP*FXHKTLYRXRSYLYMV 764
           +KT + FF    R++  F P F HK  +R +  +Y+V
Sbjct: 94  IKTTIVFFITIDRVFAFFSPIFYHK--HRNKISMYLV 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,156,217
Number of Sequences: 27780
Number of extensions: 318935
Number of successful extensions: 1020
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)