Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i08f
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical pr...    31   0.79 
Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical p...    29   2.4  
AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose tr...    29   2.4  
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical ...    28   5.6  

>Z68493-9|CAA92796.1|  338|Caenorhabditis elegans Hypothetical
           protein C33A12.13 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 333 TFSILFTYLLKIKNKNTGYIRKDKNMDFFVTVSI*LKQSYVFFF 202
           TF +++   L     N   +   KN   F+T+S+ L  SY+FFF
Sbjct: 44  TFLVIYKIFLIYSKTNWEQLEPGKNKHVFLTLSLSLIFSYLFFF 87


>Z81130-5|CAB03420.1|  361|Caenorhabditis elegans Hypothetical
           protein T23G11.7a protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +2

Query: 50  LDNLYLLICLN*KYAG-YASTKMLQCINTIDSS*SVFMKKLWLKR 181
           L +L+ +IC    +A  Y     LQ IN ID   S+F +K W K+
Sbjct: 239 LTHLFNVICKVLHFAPKYPILTNLQIINPIDQKSSIFTEKCWKKK 283


>Z70750-12|CAA94748.2|  363|Caenorhabditis elegans Hypothetical
           protein C50F4.14 protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 466 YISVNLTITYSCLCTYLCLHNNLD*KMIDCC 374
           Y+  +LT  ++ +CTYL L      + I CC
Sbjct: 130 YVGRSLTTVFNVVCTYLILGQKTSGQAIGCC 160


>AF323969-1|AAK50396.1|  363|Caenorhabditis elegans GDP-fucose
           transporter protein.
          Length = 363

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 466 YISVNLTITYSCLCTYLCLHNNLD*KMIDCC 374
           Y+  +LT  ++ +CTYL L      + I CC
Sbjct: 130 YVGRSLTTVFNVVCTYLILGQKTSGQAIGCC 160


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -1

Query: 128 LYIVTSLLRHTRHTFSSGISVNTGYLNTSVSYSVISVETRK 6
           ++ V + + H  H F+ G  +N G L TS S   + ++ R+
Sbjct: 252 IFNVENYIPHHMHLFAHGTILNVGCLTTSNSAETVPIKCRR 292


>AF067616-4|AAC19193.1|  373|Caenorhabditis elegans Hypothetical
           protein F29C4.6 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 70  DMPELKVCRVCLNKDVTMYKYDRFQLKCFYEE 165
           D+P  K  + C  +D+ MY     QL+ FY E
Sbjct: 208 DLPRAKPLKYCFERDIVMYARTN-QLEYFYTE 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,222
Number of Sequences: 27780
Number of extensions: 243673
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)