Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12i07r
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr 1||... 158 7e-40
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 29 0.54
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 28 1.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 2.2
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma... 26 6.7
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 8.8
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 8.8
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 8.8
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 25 8.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 8.8
>SPAC644.09 |||alanine racemase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 237
Score = 158 bits (384), Expect = 7e-40
Identities = 90/211 (42%), Positives = 129/211 (61%)
Frame = -2
Query: 724 LVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNK 545
LVAVSK PVE ++EAYNAGQRHFGENY+ E K L+ + D++WHFIG LQ++K
Sbjct: 26 LVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVE--LMPD---DVQWHFIGSLQSSK 80
Query: 544 INKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLE 365
K+ L+ +ET+D+EK A +N + L V +QVNTSGE+ K G+ P +
Sbjct: 81 CKKIASVKNLYSIETIDTEKKARLVNS---AREALQLPLNVYIQVNTSGEENKGGVTPSK 137
Query: 364 TTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNLDIKDVE 185
+ + + ++ L +GLMTIG NPD+ L R+ + +L + + +
Sbjct: 138 VLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELGIPL---Q 193
Query: 184 LSMGMSSDFAHAIELGATTVRVGSTIFGARP 92
LSMGMSSD+ AI+ G+ +VRVGS+IFG+RP
Sbjct: 194 LSMGMSSDYLLAIKYGSDSVRVGSSIFGSRP 224
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -2
Query: 487 KLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQG 308
+ A + + K K+ L + ++ GE+ + + TK VEHIL P D QG
Sbjct: 337 RAAKRVTSKLEKVSKQNPTLVYPIAIHLLGERGSLNFDRVTNTKLVEHIL---PLADEQG 393
Query: 307 LMTIGQ 290
++ + Q
Sbjct: 394 ILQLFQ 399
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -2
Query: 475 NLNKQWLK--YRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLDFQG 308
N+ Q LK +R+ +R +Q+N G G+ + + K H ++ N DF G
Sbjct: 193 NVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMG 250
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 745 LPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKAS 614
+P+ AP VAV++ +P EL N QR E Y E K++
Sbjct: 381 VPKRAP--VAVTEFRPSELFELNENKSQRSLAEEYEEEFLKKSN 422
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 96 LAPKIVEPTRTVVAPNSIACAKSEDI 173
LAP++VEPT +P + K D+
Sbjct: 317 LAPEVVEPTNAAASPLQLNAPKLTDV 342
>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 653 EVPLASIVSFHNKFDRFNF*YS 718
+ P+ ++SF N F+RF F Y+
Sbjct: 205 QTPIKDLLSFSNVFNRFRFLYA 226
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 8.8
Identities = 34/131 (25%), Positives = 58/131 (44%)
Frame = -2
Query: 706 IKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLG 527
+KP+E I EA G+ E +E +D ++ ++ + + + +L G
Sbjct: 1362 LKPLEDIDEAPIEGRAQ--EALEDEDNDATNEKMVSRSKQHASYEGPDEADKVALRQLKG 1419
Query: 526 SPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVE 347
S VE V+ ++ D K KER +++ + NT + L+ L+T K
Sbjct: 1420 SN---KVEDVNMDEEEDEGFKSDESVSDFKER-KLLEKQNTVSISERRELQ-LKTAK--- 1471
Query: 346 HILENCPNLDF 314
IL NC +LDF
Sbjct: 1472 EILSNCKHLDF 1482
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 8.8
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = -2
Query: 370 LETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEKLNL---D 200
LET A+ +L+ CPN D +T + + +L LI E C + + D
Sbjct: 85 LETEDAIYVVLQYCPNGDLFTYITEKKVYQGNSHLIKTVFLQLISA-VEHCHSVGIYHRD 143
Query: 199 IKDVELSMGMSSDFAHAIELGATTVRVGSTIFG 101
+K + +G + + + G T S+ FG
Sbjct: 144 LKPENIMVGNDVNTVYLADFGLATTEPYSSDFG 176
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -2
Query: 349 EHILENCPNLDFQGLMTIGQYDYDITKGPNPDYLCLIKCRQEVCEK 212
+H+LE F GL+T GQ D IT+ N D + L + + V ++
Sbjct: 32 KHLLELNSESTFLGLLTKGQADTSITR-LNQDDVRLFEKAKTVADR 76
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 661 RHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSP 521
RH + +N L+ + P KC + +GH++TNKI L G P
Sbjct: 926 RHAAKEGIN-LNGEGRKPTT-RKCSNCGQ--VGHMKTNKICPLFGRP 968
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 8.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 589 KDIKWHFIGHLQTNKINKLLG 527
+++KW + LQ+ K+N LLG
Sbjct: 950 EEVKWKYWNRLQSVKLNGLLG 970
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,932
Number of Sequences: 5004
Number of extensions: 65152
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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