Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07r
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)           84   2e-29
SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)             34   0.14 
SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)                    31   1.3  
SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7)            31   1.3  
SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)                   30   2.3  
SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)                      30   2.3  
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)                       30   2.3  
SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)                       30   2.3  
SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)                    30   2.3  
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)                        29   5.4  

>SB_26507| Best HMM Match : Ala_racemase_N (HMM E-Value=0.39)
          Length = 195

 Score = 84.2 bits (199), Expect(2) = 2e-29
 Identities = 55/128 (42%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
 Frame = -2

Query: 523 PGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEH 344
           P L+MVETVDSEKLA  LN  W K+   +E L+VMV+VNTS E+      P      +  
Sbjct: 70  PNLYMVETVDSEKLAATLNNSWGKF-PNREPLKVMVEVNTS-EEKWFFPHPHIVVVGIGI 127

Query: 343 ILENCPNLD-FQGLMTIGQYDYDITKGPNPDYLC--LIKCRQEVCEKLNLDIKDVELSMG 173
           +  N  N   F+ +   GQ      +     YL   LI+CR+E+C KLNL ++  ELSMG
Sbjct: 128 LKSNQGNTKKFESVGCSGQKMQSYLQQQLNQYLLQRLIRCREEICGKLNLPLERFELSMG 187

Query: 172 MSSDFAHA 149
           MSSD+  A
Sbjct: 188 MSSDYEKA 195



 Score = 63.3 bits (147), Expect(2) = 2e-29
 Identities = 27/37 (72%), Positives = 32/37 (86%)
 Frame = -2

Query: 745 LPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVN 635
           L ++ PRLVAVSK KP+E I+EAYN GQRHFGENYV+
Sbjct: 32  LQKLVPRLVAVSKTKPIECIIEAYNNGQRHFGENYVS 68


>SB_50907| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=7.6)
          Length = 94

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = -2

Query: 142 LGATTVRVGSTIFGARPPK 86
           +G+T VRVGSTIFG R PK
Sbjct: 1   MGSTNVRVGSTIFGVREPK 19


>SB_2508| Best HMM Match : RVT_1 (HMM E-Value=1e-05)
          Length = 525

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +3

Query: 141 NSIACAKSEDIPIDNSTSLISKFNFSHTSCLHFIRHR*SGFGPLVIS*SYCPMVISPWKS 320
           NS++C K   + +DN+ SL     FS  S +    +    F P + S  Y P      KS
Sbjct: 49  NSVSCLKKSKLCLDNTPSLYDLDTFSINSIVDNNINNFDSF-PYIYSRYYSPHSFEQMKS 107

Query: 321 RFGQFSRMCSTAFVVSN 371
           +F +  +  + +   SN
Sbjct: 108 KFTENDKKHNLSVFQSN 124


>SB_49250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 505 ETVDSEKLADNLNKQWLKYRKEKERL-RVMVQVNTSGEQAKSGLEPLETTK 356
           ET   +K  + LNK+  +  K+KERL +V  ++N   E+    +E L+ T+
Sbjct: 543 ETERLDKTRERLNKERKRLNKKKERLNKVRKRLNKEKERLNKEMERLDKTR 593


>SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7)
          Length = 228

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -2

Query: 424 VMVQVNTSGEQAKSGLEPLE-TTKAVEHILENCPNLDFQGLMTIGQYDYDITK 269
           V+++VN    Q + G+EP E   +  +HIL   PNL+F+G+ T   ++  + K
Sbjct: 45  VIIEVNVG--QERCGVEPGEQVVQLAKHILA-LPNLNFKGIQTYQGWNQHVRK 94


>SB_54947| Best HMM Match : rve (HMM E-Value=2.3e-31)
          Length = 1283

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 376  EPLETTKAVEHILENCPNLDFQGLMTIGQYDYDITKGPNPDYL 248
            E +ETT+A E +   C  L+     T+G  DY   K P PD++
Sbjct: 1231 EGVETTEATEPVPRLCGTLE-----TLGSMDYRFPKHPLPDHI 1268


>SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)
          Length = 100

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = -2

Query: 496 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 317
           D E+L+ + ++    +R  +ER+    ++++SG  +++G+      K     +E+ PNL+
Sbjct: 9   DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 67

Query: 316 FQ 311
            Q
Sbjct: 68  LQ 69


>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
          Length = 330

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = -2

Query: 496 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 317
           D E+L+ + ++    +R  +ER+    ++++SG  +++G+      K     +E+ PNL+
Sbjct: 239 DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 297

Query: 316 FQ 311
            Q
Sbjct: 298 LQ 299


>SB_17066| Best HMM Match : PHD (HMM E-Value=1.6)
          Length = 523

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/62 (24%), Positives = 34/62 (54%)
 Frame = -2

Query: 496 DSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTKAVEHILENCPNLD 317
           D E+L+ + ++    +R  +ER+    ++++SG  +++G+      K     +E+ PNL+
Sbjct: 165 DRERLSSD-SQPSSDFRNRRERVDSSSEISSSGYYSENGISGKRKQKKKVTFVESAPNLE 223

Query: 316 FQ 311
            Q
Sbjct: 224 LQ 225


>SB_5082| Best HMM Match : Fn_bind (HMM E-Value=6.8)
          Length = 367

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/81 (27%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
 Frame = -2

Query: 646 NYVNELSDKASDPLILEKCKDI-KWHFI---GHLQTNKINKLLGSPGLFMVETVDSEKLA 479
           N+ ++LS+K+S+    +    + K  +I   G++  NK+  +L   G ++ + +  ++  
Sbjct: 2   NHTSQLSEKSSNRDRNDHATSVGKLGYITENGYVDLNKVQLVLSELG-YVEDEIFKKRQQ 60

Query: 478 DNLN-KQWLKYRKEKERLRVM 419
           DN+  K+ LK  KE+ER++ M
Sbjct: 61  DNIAYKKRLKANKERERIQKM 81


>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2085

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 157 QNLKTFPLITQH-L*YPNSTSHTLLACILLGTDSQDLV 267
           +N +  PL+T H + YP + S TLL  I L T  Q +V
Sbjct: 825 ENARNHPLLTDHGVLYPRALSETLLFEITLATVDQIVV 862


>SB_20284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3307

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 265 PNPDYLCLIKCRQEVCEKLNLDIKD 191
           P PDY  L     EVC+ +NL + D
Sbjct: 648 PKPDYTVLTAAAAEVCKSMNLQMVD 672


>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1194

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = -2

Query: 553 TNKINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGL 377
           + K  K+ GS GL MV    S ++A   N  W+KY         + +    G  +K  L
Sbjct: 73  SGKDKKVYGSYGLAMVLRCPSHQVALGANYTWIKYNHVSNTWEPLAESKYYGVTSKGDL 131


>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 574

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -2

Query: 493 SEKLADNLNKQWLKYRKEKERLRVMVQVNTSGEQAKSGLEPLETTK 356
           ++KLA  L     K+ +EKE ++ +  V T+ +Q    +E L+ TK
Sbjct: 65  AQKLARELMLYKQKHEREKELVKSLKLVETTRDQTLEEIEQLQRTK 110


>SB_4274| Best HMM Match : LRV (HMM E-Value=5.7)
          Length = 327

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 177 IDNSTSLISKFNFSHTSCLHFIRHR*SGF 263
           +D S+SL S FN+S TSC        SGF
Sbjct: 262 VDYSSSLASGFNYSDTSCASASNSTSSGF 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,954,305
Number of Sequences: 59808
Number of extensions: 446510
Number of successful extensions: 1199
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)