Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12i07f
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0186 - 41857468-41857759,41857856-41857977,41858148-418582... 105 2e-23
05_01_0357 - 2802437-2802511,2802594-2802692,2803215-2803280,280... 100 2e-21
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730 32 0.39
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 29 2.1
02_04_0127 + 19992651-19993334,19993853-19993885,19994060-199941... 29 2.1
11_02_0049 - 7751779-7751925,7752046-7752189,7752398-7752489,775... 29 3.6
05_05_0292 + 23889536-23889568,23889753-23889828,23889932-238899... 28 4.8
03_02_0494 - 8873285-8873777,8873926-8874275,8874842-8875108,887... 28 4.8
11_01_0368 + 2800597-2801037,2802282-2802314,2802789-2802876,280... 28 6.3
02_02_0027 + 6194110-6194541 28 6.3
07_03_1584 + 27907345-27907357,27907693-27908039,27908202-279083... 27 8.4
>01_07_0186 -
41857468-41857759,41857856-41857977,41858148-41858269,
41858439-41858547,41860076-41860174,41860251-41860384,
41860645-41860732,41860913-41860959,41861626-41861692,
41861783-41862004
Length = 433
Score = 105 bits (253), Expect = 2e-23
Identities = 62/137 (45%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Frame = +1
Query: 181 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 360
L+ VL + A R + + R+VAV K KPV ++ E Y+AG R FGENYV E K
Sbjct: 14 LRAVLGRAAKAAERSGRAAEAV--RVVAVGKTKPVSMVRELYDAGHRCFGENYVQEFVTK 71
Query: 361 ASDPLILEKCKDIKWHFIGHLQTNKINKLLGS-PGLFMVETVDSEKLADNLNKQWLKYRK 537
A P + E DI+WHFIGHLQ+NK+ LL + P L MVE VD+ K+A++L++ +
Sbjct: 72 A--PQLPE---DIRWHFIGHLQSNKVKSLLAAVPNLHMVEGVDNVKIANHLDRAVSSLGR 126
Query: 538 EKERLRVMVQVNTSGDQ 588
+ L+V+VQVNTSG++
Sbjct: 127 DP--LKVLVQVNTSGEE 141
>05_01_0357 -
2802437-2802511,2802594-2802692,2803215-2803280,
2803619-2803665,2804067-2804133,2805062-2805283
Length = 191
Score = 99.5 bits (237), Expect = 2e-21
Identities = 58/113 (51%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Frame = +1
Query: 181 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 360
L++VLS+ + A AR + P+ + R+VAVSK KPV +I Y+AG R FGENYV EL DK
Sbjct: 14 LRSVLSRAQQAAARSGR-APE-SVRVVAVSKTKPVGVIRGVYDAGHRCFGENYVQELIDK 71
Query: 361 ASDPLILEKCKDIKWHFIGHLQTNKINKLL-GSPGLFMVETVDSEKLADNLNK 516
AS + +DI+WHFIG+LQ+NK LL G P L MVE+VD +K+A+ L++
Sbjct: 72 AS-----QLPEDIEWHFIGNLQSNKARALLAGVPNLDMVESVDDQKIANRLDR 119
>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
Length = 802
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/91 (21%), Positives = 46/91 (50%)
Frame = +1
Query: 184 KTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKA 363
+T+ +++ + + + + Q+ RLVA+ K + ++ Q + N VNE
Sbjct: 210 ETIDKELQHQITKEKECIRQVLFRLVAIIKFLGKRSLAFRGSSDQLY---NDVNEFDLVM 266
Query: 364 SDPLILEKCKDIKWHFIGHLQTNKINKLLGS 456
D L + K++++H++ H N+++ L+ S
Sbjct: 267 QDHLRHIQNKELQYHYLSHKIQNELSSLMAS 297
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 29.5 bits (63), Expect = 2.1
Identities = 26/73 (35%), Positives = 34/73 (46%)
Frame = +1
Query: 139 MTSEVDAKVDIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQ 318
+TS+ D + +Y K + E A+ARRS+ L AVS KP EL VE N+
Sbjct: 344 ITSDSDTEPSYVYVKKDDVEGEEDAMARRSEAL--------AVSDAKPAELEVEKNNSDA 395
Query: 319 RHFGENYVNELSD 357
GE SD
Sbjct: 396 AARGEETTAPPSD 408
>02_04_0127 +
19992651-19993334,19993853-19993885,19994060-19994128,
19994494-19994581,19994627-19995132,19995210-19995503,
19995557-19995906,19996020-19996456,19996718-19996743,
19996995-19997078
Length = 856
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 349 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 495
+S + +D ILE+ + + W+ G+ T+K N ++G +E + EK
Sbjct: 478 ISSREADIAILEEPEHLNWYHHGNRWTDKFNHVVGVVHTNYLEYIKREK 526
>11_02_0049 -
7751779-7751925,7752046-7752189,7752398-7752489,
7752745-7752811,7753148-7753264,7753318-7753462,
7753574-7753689,7753789-7753865,7753995-7754076,
7754180-7754317,7754781-7754999
Length = 447
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = -2
Query: 405 PFNVFAFFQY*WITGFIT*FVYIV--FS-EVPLASIVSFHNKFD 283
P+ +F +++ W+ GF+ F+Y+V FS VP S V +HN D
Sbjct: 200 PYAIFHAYRWQWLGGFVALFIYMVTTFSLYVPDWSYV-YHNDGD 242
>05_05_0292 +
23889536-23889568,23889753-23889828,23889932-23889996,
23890235-23890294,23890391-23890473,23890584-23890688,
23890942-23891566,23892008-23892198,23892292-23892400,
23892602-23892750,23892810-23892824,23893139-23893365,
23893464-23893477
Length = 583
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 551 NLSFSFLYFNHCLFKLSANFSESTVSTINKPGEPSSLLILFVCKCPMK 408
NL SF SA F +S++ +I KP P+ +L +C C ++
Sbjct: 202 NLDASFSSRTRTASGSSAIFQKSSLKSIRKPYMPTQRKLLKLCNCSVE 249
>03_02_0494 -
8873285-8873777,8873926-8874275,8874842-8875108,
8875616-8875897
Length = 463
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 349 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 495
+SD +D +LE+ + + W+ G NK K++G +E V E+
Sbjct: 112 VSDDKADIAVLEEPEHLTWYHHGRRWKNKFRKVIGVVHTNYLEYVKRER 160
>11_01_0368 +
2800597-2801037,2802282-2802314,2802789-2802876,
2802984-2803465,2803552-2803818,2803955-2804304,
2804396-2804945
Length = 736
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 349 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 495
+ K +D ILE+ + + W+ G T+K N ++G +E + EK
Sbjct: 366 IPSKEADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREK 414
>02_02_0027 + 6194110-6194541
Length = 143
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -3
Query: 254 LGAI*GRSLLLLATAISICERTVFNPYIMSTLASTSLVITEDLIILIHQ 108
LGA L + A A+++C + LAS S TE +I+ IHQ
Sbjct: 24 LGAAAAAFLAVCALALALCASHAAPERLRRALASVSRRRTEPVIVSIHQ 72
>07_03_1584 +
27907345-27907357,27907693-27908039,27908202-27908319,
27908653-27908705,27908808-27908978,27909447-27909643,
27909729-27909807,27909954-27909992,27910202-27910321,
27910417-27910518,27910654-27910737,27910832-27911074,
27911156-27911281,27911365-27911439,27911534-27911605,
27911807-27911926,27912075-27912172,27912643-27912802,
27912867-27912980,27913029-27913121,27913122-27913319,
27913404-27913497,27914032-27914192
Length = 958
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 527 FNHCLFKLSANFS-ESTVSTINKPGEPSSLLILFVCKCP 414
F + +F S N E +++NK EP +++ F+ CP
Sbjct: 132 FKNVIFNGSENAKRELKTTSLNKSLEPEDIVVQFIVSCP 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,456
Number of Sequences: 37544
Number of extensions: 249397
Number of successful extensions: 550
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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