Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07f
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical pr...   128   4e-30
AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical...    30   1.1  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical p...    27   7.5  
U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    27   7.5  
Z77660-6|CAB01177.1|  197|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U37429-4|AAA79348.1|  244|Caenorhabditis elegans Hypothetical
           protein F09E5.8 protein.
          Length = 244

 Score =  128 bits (308), Expect = 4e-30
 Identities = 61/111 (54%), Positives = 79/111 (71%)
 Frame = +1

Query: 253 RLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEKCKDIKWHFIGHLQTN 432
           RLVAVSK K  +LI   Y+  QRHFGENYV EL +K+   ++  KC DI+WHFIG +Q+N
Sbjct: 31  RLVAVSKTKSADLIEACYSQNQRHFGENYVQELEEKSD--VLASKCLDIRWHFIGQVQSN 88

Query: 433 KINKLLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLRVMVQVNTSGD 585
           KI K+  SPGL+ VETV++EK A   +K+W K+      LRV+VQVNTSG+
Sbjct: 89  KIGKICNSPGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQVNTSGE 139


>AF047655-10|AAC04396.1|  335|Caenorhabditis elegans Hypothetical
           protein C17B7.2 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 325 FGENYVNELSDKASDPLILEKCKD 396
           F ENY  EL +K    ++ EKCKD
Sbjct: 265 FPENYEEELDEKKKKEMLQEKCKD 288


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 199 QIEIAVARRSKDLPQIAPRLVA--VSKIKPVELIVEAYNAGQRHFG 330
           ++ +   + S DLPQ+   ++   VSK+ P EL+   ++   R FG
Sbjct: 10  RLPVVRVQDSSDLPQLPDEIIEIIVSKVLPTELVAYGWDQVSRSFG 55



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 388 IFPVLMDHWLYHLIRLHSFLRSASGQHC 305
           + PV +   + HL+  HSFL + SG  C
Sbjct: 110 VLPVSLFSHIQHLLEKHSFLAATSGTAC 137


>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 196 SQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAG 315
           +Q + A + +S+DLP IAP  V+  +I  V++ +E   +G
Sbjct: 344 AQYDSADSSQSEDLPDIAPESVSSEEIIEVDVNIEGSGSG 383


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 188 VFNPYIMSTLASTSLVITEDLI 123
           VFNPY++S L  + LVI  D++
Sbjct: 692 VFNPYVLSPLILSPLVICPDVV 713


>U80027-20|AAC48113.2|  400|Caenorhabditis elegans Hypothetical
           protein T28A11.2a protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 325 FGENYVNELSDKASDPLILEKCKD 396
           F ENY  EL +K    ++ E CKD
Sbjct: 330 FLENYEEELDEKKKKQMLQENCKD 353


>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -1

Query: 568 LVP*LSIFPSPSYISTIAYSNYQLIFLNQLF 476
           LVP   I PS SY     YSNY    LN  F
Sbjct: 268 LVPYAFIVPSVSYCCYSVYSNYYNQMLNNFF 298


>Z77660-6|CAB01177.1|  197|Caenorhabditis elegans Hypothetical
           protein F38H4.6 protein.
          Length = 197

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -3

Query: 500 ANFSESTVSTI-NKPGEPSSLLILFVCKCPMKC 405
           ANF ++  +T+ NKPGEP+  L + + K   KC
Sbjct: 61  ANFVDAGSTTLMNKPGEPTFKLGINLNKVEFKC 93


>Z68320-3|CAA92707.3|  477|Caenorhabditis elegans Hypothetical
           protein W07A12.6 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 572 LTCTITLNLSFSFLYFNHCLFKLSANFSESTVSTINKPGEPSSLL 438
           +  TIT  ++  F+   +C    + N S+  V+ I KPG+  ++L
Sbjct: 247 IVLTITTIIASMFIRAGYCTAYGTCNHSDVDVAFITKPGQDPAVL 291


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,117
Number of Sequences: 27780
Number of extensions: 244533
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)