Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i07f
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11930.2 68414.m01379 alanine racemase family protein contain...   113   1e-25
At1g11930.1 68414.m01378 alanine racemase family protein contain...   113   1e-25
At4g26860.1 68417.m03866 alanine racemase family protein contain...   105   3e-23
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (...    31   0.57 
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (...    31   0.57 
At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY) domain-c...    31   0.75 
At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family prote...    29   3.0  
At4g13750.1 68417.m02134 expressed protein                             28   4.0  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    28   5.3  
At3g49650.1 68416.m05426 kinesin motor protein-related several k...    27   7.0  
At1g50790.1 68414.m05712 hypothetical protein                          27   7.0  
At3g56680.1 68416.m06305 expressed protein                             27   9.3  

>At1g11930.2 68414.m01379 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 255

 Score =  113 bits (271), Expect = 1e-25
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
 Frame = +1

Query: 157 AKVDIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGEN 336
           A +D +  L++V  ++  A  +  +   QI  R+VAVSK KPV LI + Y+AGQR FGEN
Sbjct: 19  AAIDGVAALRSVFQRVNQAAEKAGRGSDQI--RVVAVSKTKPVSLIRQVYDAGQRSFGEN 76

Query: 337 YVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLL-GSPGLFMVETVDSEKLADNLN 513
           YV E+ +KA  P + E   DI+WHFIG+LQ+NK+  LL G P L  VE+VD EK+A+ L+
Sbjct: 77  YVQEIIEKA--PQLPE---DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLD 131

Query: 514 KQWLKYRKEKERLRVMVQVNTSGD 585
           +  +     ++ L+V VQVNTSG+
Sbjct: 132 R--VVGNIGRKPLKVFVQVNTSGE 153


>At1g11930.1 68414.m01378 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 257

 Score =  113 bits (271), Expect = 1e-25
 Identities = 67/144 (46%), Positives = 95/144 (65%), Gaps = 1/144 (0%)
 Frame = +1

Query: 157 AKVDIMYGLKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGEN 336
           A +D +  L++V  ++  A  +  +   QI  R+VAVSK KPV LI + Y+AGQR FGEN
Sbjct: 19  AAIDGVAALRSVFQRVNQAAEKAGRGSDQI--RVVAVSKTKPVSLIRQVYDAGQRSFGEN 76

Query: 337 YVNELSDKASDPLILEKCKDIKWHFIGHLQTNKINKLL-GSPGLFMVETVDSEKLADNLN 513
           YV E+ +KA  P + E   DI+WHFIG+LQ+NK+  LL G P L  VE+VD EK+A+ L+
Sbjct: 77  YVQEIIEKA--PQLPE---DIEWHFIGNLQSNKVKPLLSGVPNLVTVESVDDEKIANMLD 131

Query: 514 KQWLKYRKEKERLRVMVQVNTSGD 585
           +  +     ++ L+V VQVNTSG+
Sbjct: 132 R--VVGNIGRKPLKVFVQVNTSGE 153


>At4g26860.1 68417.m03866 alanine racemase family protein contains
           Pfam domain, PF01168: Alanine racemase, N-terminal
           domain
          Length = 244

 Score =  105 bits (251), Expect = 3e-23
 Identities = 62/136 (45%), Positives = 88/136 (64%), Gaps = 1/136 (0%)
 Frame = +1

Query: 181 LKTVLSQIEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQRHFGENYVNELSDK 360
           L++V+ +   A  +  +D  ++  R++ VSK KPV LI + Y+AG R FGENYV E+ DK
Sbjct: 14  LRSVILRARKAAEQVGRDAERV--RVLPVSKTKPVSLIRQIYDAGHRCFGENYVQEIIDK 71

Query: 361 ASDPLILEKCKDIKWHFIGHLQTNKINKLL-GSPGLFMVETVDSEKLADNLNKQWLKYRK 537
           A  P + E   DI+WHF+GHLQ+NK   LL G P L MV  VD EK+A++L++      +
Sbjct: 72  A--PQLPE---DIEWHFVGHLQSNKAKTLLTGVPNLAMVHGVDGEKVANHLDRAVSNLGR 126

Query: 538 EKERLRVMVQVNTSGD 585
               L+V+VQVNTSG+
Sbjct: 127 HP--LKVLVQVNTSGE 140


>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 639

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 349 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 495
           +S K +D  ILE+ + + W++ G   T+K N ++G      +E +  EK
Sbjct: 451 ISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREK 499


>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
           (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
           galactosyltransferase identical to
           digalactosyldiacylglycerol synthase (DGD1) GI:5354158
           [Arabidopsis thaliana]
          Length = 808

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 349 LSDKASDPLILEKCKDIKWHFIGHLQTNKINKLLGSPGLFMVETVDSEK 495
           +S K +D  ILE+ + + W++ G   T+K N ++G      +E +  EK
Sbjct: 451 ISSKDADIAILEEPEHLNWYYHGKRWTDKFNHVVGIVHTNYLEYIKREK 499


>At4g09250.1 68417.m01532 SPla/RYanodine receptor (SPRY)
           domain-containing protein low similarity to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 427

 Score = 30.7 bits (66), Expect = 0.75
 Identities = 11/35 (31%), Positives = 24/35 (68%)
 Frame = +1

Query: 451 GSPGLFMVETVDSEKLADNLNKQWLKYRKEKERLR 555
           G  G F+ +++DS++L D+  ++ ++  +E+E LR
Sbjct: 55  GRKGFFLYDSIDSDELGDSDQREAMEENEEEEELR 89


>At5g09430.1 68418.m01092 hydrolase, alpha/beta fold family protein
           low similarity to hydrolases from Rhodococcus sp. EtbD1
           GI:3273239, EtbD2 GI:3273241; contains Pfam profile
           PF00561: hydrolase, alpha/beta fold family
          Length = 303

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
 Frame = +1

Query: 220 RRSKDLPQIAPRLVAV----SKIKPVELIVEAYNAGQRHFGENYVNELSDKASDPLILEK 387
           RR  DLP+I  + + +     +I P+EL    Y   +RH GE+    +  KA   + LEK
Sbjct: 232 RRLSDLPRIKQKSLIIWGEEDQIFPLEL---GYRL-KRHIGESAEIVVIKKAGHAVNLEK 287

Query: 388 CKDIKWHFIGHLQTNKINKL 447
            K+    F+ HL++  I+ L
Sbjct: 288 SKE----FVKHLKSFLIDSL 303


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +1

Query: 253  RLVAVSKIKPVELIVEAYNA-----GQRHFGENYVNELSDKASDPLILEKCKDIKWHFI 414
            R   +S+++   L++  Y       G  HFGE Y N+++ K      L K  DI WH +
Sbjct: 1213 RKYIISELRSKALVLSNYGLKQLGEGSIHFGEEYGNQVNMKK-----LTKNLDISWHVV 1266


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 377 YWKNAKTLNGTSLDIYKQ 430
           +WK AKT NG  LD +KQ
Sbjct: 129 FWKLAKTCNGEKLDKWKQ 146


>At3g49650.1 68416.m05426 kinesin motor protein-related several
           kinesin-like proteins
          Length = 813

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
 Frame = +1

Query: 202 IEIAVARRSKDLPQIAPRLVAVSKIKPVELIVEAYNAGQR-HFGENYVNELSDKAS--DP 372
           +EIAV RR K+  Q+    +A+  +   E   E  N GQ+   G N    L   A+  + 
Sbjct: 224 LEIAVKRRQKNQNQVMRGKLALVDLAGSERAAETNNGGQKLRDGANINRSLLALANCINA 283

Query: 373 LILEKCKDIKWHFIGHLQTNKINK--LLGSPGLFMVETVDSEKLADNLNKQWLKYRKEKE 546
           L  +  K + +    + +  +I K  L G+    MV T+       +     LKY    +
Sbjct: 284 LGKQHKKGLAYVPYRNSKLTRILKDGLSGNSQTVMVATISPADSQYHHTVNTLKYADRAK 343

Query: 547 RLRVMVQVN 573
            ++  +Q N
Sbjct: 344 EIKTHIQKN 352


>At1g50790.1 68414.m05712 hypothetical protein
          Length = 812

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 445 LLGSPGLFMVETVDSEKLADNLNKQWLKYRKEK 543
           +LGSP    +++   E +A  L K+WLK +K+K
Sbjct: 138 VLGSPVFATLDSSGKEIMA-KLGKEWLKIKKDK 169


>At3g56680.1 68416.m06305 expressed protein
          Length = 353

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = -2

Query: 321 PLASIVSFHNKF-DRFNF*YSNQSWCYLR*VFTSSGHGNFNL*KNRLQSIHYVNFSIDFT 145
           P + +  F ++  DRF+  Y  +   Y+R +  +    NFNL    +Q I    + + FT
Sbjct: 225 PTSRVAIFRDREKDRFDPDYDRRHQRYIRSLPVNQ---NFNLPPFNIQQIPTPYYEMGFT 281

Query: 144 GHN*RFNYPHPPKKYELNRH 85
           G+N     P PP       H
Sbjct: 282 GYN---QIPSPPAPLGFGPH 298


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,678
Number of Sequences: 28952
Number of extensions: 219143
Number of successful extensions: 611
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)