Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i05f
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    28   0.84 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   1.1  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   2.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   2.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.4  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.9  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   7.9  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   7.9  

>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 212 ELLDILDMYSLCILNSGSPTRLTKPGEVISAIDLSICTPQLAS 84
           ++LD+   +   I ++ S TRL+  GE+IS  DL I   Q  S
Sbjct: 87  DVLDVSGEFQRDIHHTVSKTRLSPSGEIISVDDLDIGNQQSIS 129


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +3

Query: 303 NEVFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 482
           N+V NF++      R+  R     +     D KA+T+   R+  +    + +     I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344

Query: 483 SPVFS 497
            PVFS
Sbjct: 345 PPVFS 349


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -3

Query: 314 KNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCILNSG 162
           K FISV    F  L + N  HT + S     Y  E L   D+    I   G
Sbjct: 11  KTFISVRLNAFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFICGKG 61


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 452  RNSSTFSSFPLPSHSNCFSVIAAIV 378
            RN S   S P P+H N FS+I  I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 278 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 186
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
 Frame = -3

Query: 467 VCLLIRNSSTFSSFPLPSHSNC------FSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF 306
           +C L    + F S P+ SH +       F+ +AAI+  +  + +Y P+   ++   I  F
Sbjct: 59  ICHLFLLLNIFISIPIISHLSPGFMPVGFTALAAILLAMQIMFVYSPNAPERVTQRIICF 118

Query: 305 ISVLPRPFMILGDFNSHHTSWGSS 234
           +  +    + L     H   W S+
Sbjct: 119 LLAIDVLVVFLSPILRHREGWRSN 142


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
 Frame = -3

Query: 455  IRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFNEIKNF-ISVLPRPFM 279
            I +SST  S P PS S+     ++I+ G   + +     ++ I + +  +  SV+P    
Sbjct: 618  ISSSSTILSSPTPSTSSLMISSSSIISGSSSI-LSSSISTIPISSSLSTYSSSVIPSSST 676

Query: 278  ILGDFNSHHTSWG--SSVSNSYGYELLDILDMYSLCILN-SGSPTRLTKPGEVISAIDLS 108
            ++   +S   S    +S S+S       ++  YS  + N + S   LT      SAI  S
Sbjct: 677  LVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSS-SSAIPTS 735

Query: 107  ICTPQLASSLSWSTLCSTYNS 45
            + +  L ++ S +TL S+  S
Sbjct: 736  VNSSTLITASSSNTLLSSITS 756


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 95  QLASSLSWSTLCSTYNSDHYPIIISFPLA 9
           Q+ + L W   C  YN D     +S PL+
Sbjct: 497 QITTWLKWPRYCEYYNFDIAETFLSIPLS 525


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 549 NLAKARFCIQNPWLFVLKRRQG*WIWWCMPTH 454
           ++ +  FC  +P+  V   R G  I+W M TH
Sbjct: 230 SVKQVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 317 IKNFISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC 177
           + +FIS  P   +   D +S    W S +     YE ++ L +Y LC
Sbjct: 237 VLSFISRDPSTQVPYKDMSSCEALWISRMDELSNYERIEQLALYLLC 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,020
Number of Sequences: 5004
Number of extensions: 47022
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)