Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i04r
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77850.1 68414.m09072 transcriptional factor B3 family protei...    31   0.66 
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative...    28   4.7  
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative...    28   4.7  
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative...    28   4.7  
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ...    27   8.2  

>At1g77850.1 68414.m09072 transcriptional factor B3 family protein
           similar to auxin response factor 10 GI:6165644 from
           [Arabidopsis thaliana]; contains Pfam profile PF02362:
           B3 DNA binding domain
          Length = 585

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 20/57 (35%), Positives = 25/57 (43%)
 Frame = +1

Query: 103 KSITITNIFYILLGRFDNKFQQNYKNGSRSVITKSGLTNKNGGFFIDVTNFCTESIF 273
           +  T TN  Y   GRFD     N K  + + I      N  GGF   V  FC +S+F
Sbjct: 93  QQFTPTN--YSRFGRFDGDVDDNNKVTTFAKILTPSDANNGGGF--SVPRFCADSVF 145


>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 294 KINIIVLKYRFRTKIRNVNEKAAIFIGQTRFCYNASTAIFIV 169
           K NI+V++Y    +  N+ E  + F+G    C  A+ A+ I+
Sbjct: 726 KPNIVVMRYPEIWRRENLTEIPSTFVGIINDCITANKAVVII 767


>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 294 KINIIVLKYRFRTKIRNVNEKAAIFIGQTRFCYNASTAIFIV 169
           K NI+V++Y    +  N+ E  + F+G    C  A+ A+ I+
Sbjct: 726 KPNIVVMRYPEIWRRENLTEIPSTFVGIINDCITANKAVVII 767


>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
           similar to cation-chloride co-transporter GB:AAC49874
           GI:2582381 from [Nicotiana tabacum], Cation-Chloride
           Cotransporter (CCC) Family Member, PMID:11500563
          Length = 975

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 294 KINIIVLKYRFRTKIRNVNEKAAIFIGQTRFCYNASTAIFIV 169
           K NI+V++Y    +  N+ E  + F+G    C  A+ A+ I+
Sbjct: 726 KPNIVVMRYPEIWRRENLTEIPSTFVGIINDCITANKAVVII 767


>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
           protein PBF protein, Triticum aestivum, EMBL:AJ012284
          Length = 210

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 151 DNKFQQNYKN-GSRSVITKSGLTNKNGGFFIDVTNFCTESI 270
           D  FQQ Y + GS  +I    +    GG+  ++T++C   +
Sbjct: 158 DESFQQGYYDVGSNDLIDNPLINQSIGGYVDNLTSYCINQV 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,669,780
Number of Sequences: 28952
Number of extensions: 208980
Number of successful extensions: 384
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)