Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i03f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)               29   3.8  
SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)                      29   3.8  
SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)                29   3.8  
SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)          28   6.6  

>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 9   AMLEIYGESIIHLIEEFGAKGVCQ 80
           +MLE+Y E++  L+EEFG+ G  Q
Sbjct: 607 SMLEVYNETLKDLLEEFGSGGGTQ 630


>SB_11638| Best HMM Match : Kinesin (HMM E-Value=5.5e-10)
          Length = 208

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 9  AMLEIYGESIIHLIEEFGA 65
          AMLE+Y E++  L+EEFG+
Sbjct: 34 AMLEVYNETLKDLLEEFGS 52


>SB_49734| Best HMM Match : SapB_2 (HMM E-Value=0)
          Length = 457

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   CHAMLEIYGESIIHLIEEFGAKGVCQRIGFCGRTE 107
           C+A++  YG +++ +I       +C+ IG C   +
Sbjct: 357 CNAIVSEYGSTVLQIIANTDPTTLCKEIGLCSANQ 391


>SB_47698| Best HMM Match : SapB_2 (HMM E-Value=1.5e-06)
          Length = 175

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 3   CHAMLEIYGESIIHLIEEFGAKGVCQRIGFCGRTE 107
           C+A++  YG +++ +I       +C+ IG C   +
Sbjct: 22  CNAIVSEYGSTVLQIIANTDPTTLCKEIGLCSANQ 56


>SB_53568| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.61)
          Length = 375

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 26  RRKHHSPHRRVWREGRLPE 82
           RRKHH PH       RLPE
Sbjct: 225 RRKHHRPHHHRHHHRRLPE 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,284
Number of Sequences: 59808
Number of extensions: 307171
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)