Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12i03f
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04460.1 68417.m00648 aspartyl protease family protein contai...    29   1.8  
At1g62290.1 68414.m07027 aspartyl protease family protein contai...    29   2.4  
At1g11910.1 68414.m01374 aspartyl protease family protein contai...    29   3.1  
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic...    28   4.1  
At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SD...    27   7.2  
At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SD...    27   7.2  
At2g35320.1 68415.m04331 expressed protein                             27   7.2  

>At4g04460.1 68417.m00648 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 508

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   CHAMLEIYGESIIH-LIEEFGAKGVCQRIGFCGRTETAYVRM 125
           C A+++ YG+++++ L+ +   K VC +IG C    T  V M
Sbjct: 322 CKAVVDQYGKTMLNSLLAQEDPKKVCSQIGVCAYDGTQSVSM 363


>At1g62290.1 68414.m07027 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 513

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   CHAMLEIYGESIIHLI-EEFGAKGVCQRIGFCGRTETAYVRM 125
           C  +++ YG++I+ L+  E   K +C +IG C    T  V M
Sbjct: 324 CKTVVDQYGQTILDLLLAETQPKKICSQIGLCAYDGTHGVSM 365


>At1g11910.1 68414.m01374 aspartyl protease family protein contains
           Pfam profiles: PF00026 eukaryotic aspartyl protease,
           PF03489 surfactant protein B, PF05184 saposin-like type
           B, region 1
          Length = 506

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 3   CHAMLEIYGESIIHLI-EEFGAKGVCQRIGFCGRTETAYVRM 125
           C  +++ YG++I+ L+  E   K +C +IG C    T  V M
Sbjct: 317 CKTVVDQYGQTILDLLLSETQPKKICSQIGLCTFDGTRGVSM 358


>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
           to receptor kinase (CLV1) GB:AAB58929 GI:2160756
           [Arabidopsis thaliana]
          Length = 980

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 68  GRLPEDRILWSDRNRIRAHVPRE 136
           G  P  + L+ DRNR R ++PRE
Sbjct: 477 GNFPNLQTLFLDRNRFRGNIPRE 499


>At5g50700.1 68418.m06282 short-chain dehydrogenase/reductase (SDR)
           family protein contains oxidoreductase, short chain
           dehydrogenase/reductase family domain, Pfam:PF00106
          Length = 349

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 180 IESVISSCNVCNPSFFFYQKCLFL-SLFFFMIDQHNFVTIINNNKKLYQK 326
           +E +    N+  P F F+  C FL   +FF   Q  F TI + N  LY K
Sbjct: 1   MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSEN--LYGK 48


>At5g50600.1 68418.m06268 short-chain dehydrogenase/reductase (SDR)
           family protein similar to sterol-binding dehydrogenase
           steroleosin GI:15824408 from [Sesamum indicum]
          Length = 349

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 180 IESVISSCNVCNPSFFFYQKCLFL-SLFFFMIDQHNFVTIINNNKKLYQK 326
           +E +    N+  P F F+  C FL   +FF   Q  F TI + N  LY K
Sbjct: 1   MELINDFLNLTAPFFTFFGLCFFLPPFYFFKFLQSIFSTIFSEN--LYGK 48


>At2g35320.1 68415.m04331 expressed protein
          Length = 307

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 450 IFYSNTGLFYHNTYSPIEIGC*KFFKYLKNR 542
           +F  +T L + N YS I++G  + FK++K R
Sbjct: 210 LFRLDTFLRHENVYSSIDVGKLQCFKWIKER 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,672,517
Number of Sequences: 28952
Number of extensions: 218602
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)