Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12h24f
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.2  
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g...    27   7.2  
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ...    27   7.2  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    27   9.5  
U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 109  SKISETRTANLAS*PVGLQKTLRSRIRSAF-VWSAPSGESAPAAVQSFTTNGS*LRPTAS 285
            S ISE+ TA  AS   G   T+ S   S     SA SG+   +  Q  +   + +  TAS
Sbjct: 1698 STISESSTAASASSQTGSTVTMGSSSTSGVSTSSASSGQPQMSTSQGSSAGSTVVSSTAS 1757

Query: 286  PIASTS 303
            P AS++
Sbjct: 1758 PAASST 1763


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical protein
            R04E5.8a protein.
          Length = 997

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/76 (27%), Positives = 25/76 (32%)
 Frame = +2

Query: 107  HRRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPR 286
            H R   HGPP +H       R  D    Q             RR NH        G   +
Sbjct: 914  HNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQGRNRQ 973

Query: 287  QSHQLRGAFGLDEPDP 334
            Q H+ RG    +E  P
Sbjct: 974  QDHE-RGDEAHEEARP 988


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical
           protein R11A8.6 protein.
          Length = 1141

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 325 FVKPKRTTKLMRLARQWAAVRTHSW 251
           FVK KR    +R AR WA  R   W
Sbjct: 440 FVKEKRFANWLRDARDWAVSRNRFW 464


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = +2

Query: 92  RIRSDHRRSPKHGPPISH------RSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSP 253
           R RS HRR P H    S+       SRL  RRRS     Q  + Q +   +  ++ N S 
Sbjct: 18  RSRSPHRRQPHHSRSSSNNISSSLHSRLRRRRRSRSQRKQLQWQQQQLRLRKEQQ-NQSR 76

Query: 254 RMGPDCGPLPRQSHQLR 304
           R    C  L  Q  +L+
Sbjct: 77  RRTSSCQKLQLQRSKLK 93


>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
            protein.
          Length = 1492

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 179  PASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPRQSH 295
            P    PSY  P      L  F HSP+  P   P P  SH
Sbjct: 1231 PPQPHPSYQAPAP-PPALSVFQHSPQGAPITAPPPASSH 1268


>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
            protein Y53H1C.2a protein.
          Length = 1512

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +2

Query: 179  PASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPRQSH 295
            P    PSY  P      L  F HSP+  P   P P  SH
Sbjct: 1251 PPQPHPSYQAPAP-PPALSVFQHSPQGAPITAPPPASSH 1288


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
 Frame = +3

Query: 243 IIHHEWVLTAAHC---LANRINFVVRLGLTNLTRPDYLVETTHKFIHPRYIEILGGVQTD 413
           +I   W++TAAHC   L  R    VR    N  R   + E    +IH  Y         +
Sbjct: 70  VIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERSFSVKEA---YIHSGY---NNQTADN 123

Query: 414 DIALVKLNHHIPYSRYIQPCRLQNSEQKNI-NYEGAIFTVSGYGRT 548
           DIAL++++  +     I+P  L + + K +  Y+  +  V GYG T
Sbjct: 124 DIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGV--VIGYGLT 166


>U41538-3|AAP31431.1|  142|Caenorhabditis elegans Hypothetical
           protein R04E5.8b protein.
          Length = 142

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/64 (26%), Positives = 20/64 (31%)
 Frame = +2

Query: 107 HRRSPKHGPPISHRSRLACRRRSDPASDQPSYGQPRRGSQLLRRFNHSPRMGPDCGPLPR 286
           H R   HGPP +H       R  D    Q             RR NH        G   +
Sbjct: 70  HNRGHHHGPPRNHNQDRNRHRNHDGNRHQNQDRSRHHNQDRNRRQNHDRNRHQSQGRNRQ 129

Query: 287 QSHQ 298
           Q H+
Sbjct: 130 QDHE 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,992
Number of Sequences: 27780
Number of extensions: 280113
Number of successful extensions: 746
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)