Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12h02r
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0280 + 28129750-28129868,28130677-28131145,28133605-281338... 34 0.13
05_04_0011 + 17139322-17139451,17139552-17140174 33 0.22
01_01_0150 - 1344247-1345011 32 0.51
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 25 0.66
08_01_0976 - 9825000-9825288,9827206-9827600 29 3.6
06_01_0512 - 3695109-3695523,3696318-3696868 29 3.6
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 6.3
03_03_0188 + 15269347-15270213 28 6.3
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 28 6.3
06_01_0254 + 1898586-1899617 28 8.4
04_01_0087 + 954313-954612 28 8.4
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 28 8.4
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 28 8.4
02_02_0402 - 9852407-9853519 28 8.4
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858 28 8.4
>01_06_0280 +
28129750-28129868,28130677-28131145,28133605-28133802,
28134168-28134412,28134749-28134907,28135491-28135578,
28135983-28136264
Length = 519
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 233 NPDVETPPT-APNRRPPGGVSNTTDGARHADAIRVPNRSETP 111
+PDV PP PNRRP G S+T ++ R P+++ TP
Sbjct: 117 DPDVWAPPRDTPNRRPTRGQSSTRKSSQDGAWARGPSKTGTP 158
>05_04_0011 + 17139322-17139451,17139552-17140174
Length = 250
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -1
Query: 236 INPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
I+ + + PP P PP G + DG R P +E PPPP
Sbjct: 165 IHNEFQPPPPPPPPSPPNGANVIGDGKRLTPIGPDPIHNEFPPPP 209
>01_01_0150 - 1344247-1345011
Length = 254
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 158 ARHADAIRVPNRSETPPPPYN--ECCINI*LRGINYFS*VY 42
A H D IR+P+ + PP P +CC +I + + F +Y
Sbjct: 18 AAHGDTIRLPSEGDAPPQPAKPWDCCDDIEMSPLKIFPPLY 58
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 25.4 bits (53), Expect(2) = 0.66
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 102 WWWWSLGSVWDTDGVSVSGSIGRIR 176
WWWW++ V V GS G+ R
Sbjct: 20 WWWWAVAVVGCGAQPVVVGSYGQPR 44
Score = 24.6 bits (51), Expect(2) = 0.66
Identities = 5/6 (83%), Positives = 6/6 (100%)
Frame = +3
Query: 96 IVWWWW 113
+VWWWW
Sbjct: 16 VVWWWW 21
>08_01_0976 - 9825000-9825288,9827206-9827600
Length = 227
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 75 LYIDAAFIVWWWWSLGS 125
L + + VWWWWSL S
Sbjct: 46 LSLSVSLPVWWWWSLNS 62
>06_01_0512 - 3695109-3695523,3696318-3696868
Length = 321
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 215 PPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPPYN 96
PP A RR A HA A+R R PPPP+N
Sbjct: 233 PPPAKRRRRRITGDQQAAAAEHAAALR--RRMPVPPPPFN 270
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 236 INPDVETPPTAPNRRPPGGVSNTTD-GARHADAIRVPNRSETPPPP 102
+ P +PP AP PP +T G +P S+T PPP
Sbjct: 584 VPPPEPSPPPAPKAAPPPPPPKSTGPGPPRPPPPAMPGSSKTRPPP 629
>03_03_0188 + 15269347-15270213
Length = 288
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = -2
Query: 175 LIRPMEPDTLTPSVSQTDPRLHHHHTMNAASIYN 74
++ P P + + S + + HHHH M ++N
Sbjct: 210 MVAPPPPPPTSAAASSSADQYHHHHGMTMGGLFN 243
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -1
Query: 218 TPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPP 102
TPP P+ P GG + +++ A V + PPPP
Sbjct: 96 TPP--PSSAPSGGRATSSEARESPHATSVDDGGRAPPPP 132
>06_01_0254 + 1898586-1899617
Length = 343
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/63 (23%), Positives = 26/63 (41%)
Frame = -1
Query: 269 EMRANLLWSTIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPPYNEC 90
E+R N W+T + P + DG I +P ++ PPPP ++C
Sbjct: 38 ELRRNRCWATSHGWVLCCDPATLSTFLWNPTGGDDDGGGGGGKIALPPFTQPPPPPNSQC 97
Query: 89 CIN 81
++
Sbjct: 98 ALS 100
>04_01_0087 + 954313-954612
Length = 99
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -2
Query: 187 LVASLIRPMEPDTLTPSVSQTDPRLHHHH 101
LV P P T+T S S D HHHH
Sbjct: 15 LVGLFSFPPRPPTVTFSSSSVDDNHHHHH 43
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = -1
Query: 227 DVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPP 105
D TP P R+PP GA+ RV E P P
Sbjct: 72 DAGTPSKKPKRQPPEPKPRKHKGAKSEKPHRVSGEGEKPTP 112
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/57 (40%), Positives = 23/57 (40%), Gaps = 9/57 (15%)
Frame = -1
Query: 245 STIINPDVETPPTA--PNRRPPG-GVSNTTDGARHADAIRVPN------RSETPPPP 102
ST TP TA P R PP G A A A R P R ETPPPP
Sbjct: 23 STSARTPTPTPSTAGDPRRHPPPPGPGARNPAASSAAAFRPPPQPQQQPRVETPPPP 79
>02_02_0402 - 9852407-9853519
Length = 370
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -1
Query: 230 PDVETPPTAPNRRPPGGVSNTTDGARHADAI-RVPNRSETPPPP 102
P+ T+ +R G S++T ++ + R N+S PPPP
Sbjct: 147 PEAAATATSSKKRNSGPESSSTASSKRPKTVHRQQNKSPLPPPP 190
>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
Length = 275
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1
Query: 308 VRRRTRRLQRSDAEMRANLLWSTIINPDVETPP 210
+RRR R L++SDA +RA L W +PD PP
Sbjct: 206 MRRRWRELRKSDAFLRA-LYW----HPDQPVPP 233
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,389,450
Number of Sequences: 37544
Number of extensions: 388903
Number of successful extensions: 1482
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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