Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_O08
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 106 1e-23
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 104 4e-23
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 104 4e-23
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 48 5e-06
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 48 5e-06
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 37 0.010
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 37 0.010
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 36 0.018
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 36 0.031
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 36 0.031
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 34 0.095
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 33 0.13
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 33 0.13
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 33 0.13
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 33 0.13
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 33 0.22
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 32 0.38
At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putati... 32 0.38
At1g77770.2 68414.m09056 expressed protein 31 0.51
At1g77770.1 68414.m09055 expressed protein 31 0.51
At3g62370.1 68416.m07006 expressed protein 29 2.7
At1g68140.1 68414.m07783 expressed protein 29 3.6
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 106 bits (254), Expect = 1e-23
Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKI---KSKNSK 273
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEF K+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 274 TADREEKRTLGFVLLRGENIVSLTI 348
+REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 104 bits (250), Expect = 4e-23
Identities = 46/84 (54%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSK--T 276
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEF K+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 277 ADREEKRTLGFVLLRGENIVSLTI 348
+RE++RTLG VLLRGE ++S+T+
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 104 bits (250), Expect = 4e-23
Identities = 46/84 (54%), Positives = 63/84 (75%), Gaps = 2/84 (2%)
Frame = +1
Query: 103 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSK--T 276
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEF K+ K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 277 ADREEKRTLGFVLLRGENIVSLTI 348
+RE++RTLG VLLRGE ++S+T+
Sbjct: 61 EEREDRRTLGLVLLRGEEVISMTV 84
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 48.0 bits (109), Expect = 5e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTAD---REEKRTLGF 309
++ R+ V L+ R G AFD+H+N+ILGD EE + +T + R KRT+ F
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEF 79
Query: 310 VLLRGENIV 336
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF---XKIKSKNSKTADREEKRTLGF 309
I R+ V L+ R G AFD+H+N+ILGD EE +I + + R KRT+ F
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPF 79
Query: 310 VLLRGENIV 336
+ +RG+ ++
Sbjct: 80 LFVRGDGVI 88
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +1
Query: 121 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRT 300
+++++ + ++ V ++D R F+G F DK N+IL D E+ I+ + E+R
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPT---EQRC 81
Query: 301 LGFVLL 318
LG +L+
Sbjct: 82 LGMILI 87
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 151 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLGFVLLRGEN 330
+ VI D R +G K FD+ N+IL + E + T + ++ LG ++RG+N
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE------RVFSTKEGVQQHVLGLYIIRGDN 68
Query: 331 I 333
I
Sbjct: 69 I 69
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/77 (23%), Positives = 45/77 (58%)
Frame = +1
Query: 112 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREE 291
G+ ++++++ ++++ L +R +GT + FD+ MNL++ N+ + ++
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVV-----------DNTVEVNGDD 53
Query: 292 KRTLGFVLLRGENIVSL 342
K +G V++RG +IV++
Sbjct: 54 KTDIGMVVIRGNSIVTV 70
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFXKIKSKNSKTADREEK 294
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI--------VGEQYCD 63
Query: 295 RTLGFVLLRGENIV 336
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 35.5 bits (78), Expect = 0.031
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCEEFXKIKSKNSKTADREEK 294
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE ++
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI--------VGEQYCD 63
Query: 295 RTLGFVLLRGENIV 336
LG ++RGEN+V
Sbjct: 64 IPLGLYVIRGENVV 77
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 33.9 bits (74), Expect = 0.095
Identities = 18/77 (23%), Positives = 43/77 (55%)
Frame = +1
Query: 112 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREE 291
G+ ++++++ ++++ L +R GT + FD+ MNL++ N+ + +
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVV-----------DNTVEVNGND 53
Query: 292 KRTLGFVLLRGENIVSL 342
K +G V++RG +IV++
Sbjct: 54 KTDIGMVVIRGNSIVTV 70
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + +++R +G +AFD+H N++L + E K K + R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + +++R +G +AFD+H N++L + E K K + R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + +++R +G +AFD+H N++L + E K K + R +
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 92
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 93 MFLRGDSVI 101
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +1
Query: 142 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADR----EEKRTLGF 309
N +V + +++R +G +AFD+H N++L + E K K + R +
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRDRFISK 93
Query: 310 VLLRGENIV 336
+ LRG++++
Sbjct: 94 MFLRGDSVI 102
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+Q ++ + Q G FD++MNL+L + EE IK K ++ LG
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE-VSIKKKT--------RKPLG 71
Query: 307 FVLLRGENI 333
+LL+G+NI
Sbjct: 72 RILLKGDNI 80
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 31.9 bits (69), Expect = 0.38
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 127 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKRTLG 306
+Q ++ + Q G FD++MNL+L + EE IK KN+ ++ LG
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEE-VSIK-KNT-------RKPLG 71
Query: 307 FVLLRGENI 333
+LL+G+NI
Sbjct: 72 RILLKGDNI 80
>At1g19120.1 68414.m02378 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116
Length = 128
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = +1
Query: 118 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFXKIKSKNSKTADREEKR 297
+ + +++ ++ V+L+D R +G ++FD+ N +L + E + D
Sbjct: 12 STSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIV-------GDLYCDI 64
Query: 298 TLGFVLLRGENIV 336
LG ++RGEN+V
Sbjct: 65 PLGLYIIRGENVV 77
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 106 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 216
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 106 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 216
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +3
Query: 573 DGWPSSXNDGSSS--WHGSWW 629
DG S ND S+ WHG+WW
Sbjct: 200 DGLGPSGNDSSAQNDWHGAWW 220
>At1g68140.1 68414.m07783 expressed protein
Length = 334
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 139 INYRVRVILQDSRTFIGTFKAFDKHMNL 222
+N + R+ +Q++ + GTFK KHM +
Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,433,654
Number of Sequences: 28952
Number of extensions: 170101
Number of successful extensions: 514
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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