Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O06
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)             177   6e-45
SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                     177   8e-45
SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   2e-38
SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)            136   1e-32
SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   2e-14
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score =  177 bits (431), Expect = 6e-45
 Identities = 93/156 (59%), Positives = 107/156 (68%), Gaps = 2/156 (1%)
 Frame = +2

Query: 191 MAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSSWRVISSIEQKTXGSXRKQQMAKE 370
           MA AMKE TE    L  EERNLLSVAY NVV A+RSSWRVISSIEQK  GS RK+Q  + 
Sbjct: 1   MAKAMKEATEISETLEQEERNLLSVAYKNVVGAKRSSWRVISSIEQKLEGSERKKQNTET 60

Query: 371 YXVKVQKELREICYDVLGLLDKHLIPKASNPESKVFYLKMKGDYYRYLAXVATGETXHSV 550
           Y   ++ EL E+C  VL LL+  LIP A + ESKVFYLKMKGDYYRY   VA  +    V
Sbjct: 61  YRQTIENELNEVCETVLKLLESKLIPNAQSTESKVFYLKMKGDYYRYEGEVAGADRRREV 120

Query: 551 VXDSQKAYQDAFEISK--AKMQPTHPIXLGLALNFS 652
           V  + KAY +A EI++   K+ PT PI LGLALNFS
Sbjct: 121 VQKAMKAYSEAQEIAEKDPKLPPTDPIRLGLALNFS 156



 Score = 35.5 bits (78), Expect = 0.038
 Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 545 SVVXDSQKAYQDAFEISKA---KMQPTHPIXLGLALNFS 652
           +VV  + +AY++A E ++    K+ PT PI LGLALNFS
Sbjct: 207 TVVEKALQAYKEAKEAAETGDGKLAPTDPIRLGLALNFS 245


>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score =  177 bits (430), Expect = 8e-45
 Identities = 93/184 (50%), Positives = 121/184 (65%), Gaps = 3/184 (1%)
 Frame = +2

Query: 110 PSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXA 289
           P+      +EEL+  AK+AEQAERYDDM  AM  VT+ G  L++EERNLLSVAY NVV A
Sbjct: 3   PNFVSKCSREELIHLAKMAEQAERYDDMVNAMSAVTKEGKPLNDEERNLLSVAYKNVVGA 62

Query: 290 RRSSWRVISSIEQKTXGSXRKQQMAKEYXVKVQKELREICYDVLGLLDKHLIPKAS---N 460
           RRSSWRVISS+EQK         + K+Y   +  EL   C +VL +L+ +L+       N
Sbjct: 63  RRSSWRVISSMEQK--APEEMAALTKKYREDITNELNGKCAEVLDILENYLLKDGQDDIN 120

Query: 461 PESKVFYLKMKGDYYRYLAXVATGETXHSVVXDSQKAYQDAFEISKAKMQPTHPIXLGLA 640
            E+KVFYLKM+GDY+RYL  VA G++    +  S++AY+DA      ++ P+HPI LGLA
Sbjct: 121 TEAKVFYLKMRGDYHRYLVEVAEGDSRKENIEKSREAYKDA-SAKAEELSPSHPIRLGLA 179

Query: 641 LNFS 652
           LNFS
Sbjct: 180 LNFS 183


>SB_34217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score =  155 bits (377), Expect = 2e-38
 Identities = 77/138 (55%), Positives = 103/138 (74%)
 Frame = +2

Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSS 301
           M V +E L+  AKL+EQ +RYD+MA  MKEV+E   +LS EERNLLSV+Y N+V  RRSS
Sbjct: 80  MMVVRETLIYNAKLSEQCDRYDEMAKIMKEVSEKYPKLSKEERNLLSVSYKNIVGQRRSS 139

Query: 302 WRVISSIEQKTXGSXRKQQMAKEYXVKVQKELREICYDVLGLLDKHLIPKASNPESKVFY 481
           WRVISSIE+KT  S     + K+Y   ++KEL+++C +VLG+L++ LIP A + E+KVFY
Sbjct: 140 WRVISSIEEKTAESS-SLAIVKKYKACIEKELKDLCKEVLGILER-LIPGAEDEENKVFY 197

Query: 482 LKMKGDYYRYLAXVATGE 535
            K+KGDYYRYLA  + G+
Sbjct: 198 FKLKGDYYRYLAEFSHGQ 215


>SB_37955| Best HMM Match : 14-3-3 (HMM E-Value=6.5861e-44)
          Length = 251

 Score =  136 bits (329), Expect = 1e-32
 Identities = 69/123 (56%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
 Frame = +2

Query: 131 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSSWRV 310
           DKEE V  AKLAEQAERYDDM  +MKEV + G ELS E+RNLLSVAY NV+ ARR+SWR+
Sbjct: 3   DKEEHVYMAKLAEQAERYDDMVNSMKEVAKMGTELSTEDRNLLSVAYKNVIGARRASWRI 62

Query: 311 ISSIEQKTXGSXR---KQQMAKEYXVKVQKELREICYDVLGLLDKHLIPKASNPESKVFY 481
           I+SIEQK         K +M + Y   +++EL+ IC ++L LLD  LI  + + ESKVFY
Sbjct: 63  ITSIEQKEESKGEDMAKLEMIRNYRKTIEEELKTICGEILSLLDDSLIKNSQSEESKVFY 122

Query: 482 LKM 490
            K+
Sbjct: 123 NKI 125


>SB_34218| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
 Frame = +2

Query: 122 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYXNVVXARRSS 301
           M   + ELVQ AKLAEQ ER++D+   MK+  E    L+ E RNLLSV Y NVV ++R +
Sbjct: 186 MQDSRNELVQLAKLAEQTERFEDVILYMKKAIEINPSLNKEHRNLLSVGYKNVVGSKRFA 245

Query: 302 WRVISSIEQKTXGSXRKQQMAK--EYXVKVQKELREICYDVL 421
           WR +     ++    R  Q+    +Y  K++ EL+ +C ++L
Sbjct: 246 WRHLHHDALQSGRYIRDSQLKGIIKYKEKIEMELKTLCREIL 287


>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 994

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = +2

Query: 98  ISPLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEER 250
           +SPLPS+      +E+V   KLAE+ E  ++++      T+   E + EE+
Sbjct: 643 VSPLPSTATEDQMQEVVDSNKLAEKKEVTEEVSPVKPLSTKESKENALEEK 693


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 12/121 (9%)
 Frame = +2

Query: 119  TMSVDKEELVQRAKLAEQAERY---DDMAAAMKEVTETGVELSNE-ERNLLSVAYXNVVX 286
            ++S+  +EL  +  LA Q  +    D   A  K+VT   ++ + E  R    +   +   
Sbjct: 3123 SLSLKSQELEAKNALANQKLKQMVKDQQEAEKKKVTSMEIQTTIETHRKQTIIEMVSCAA 3182

Query: 287  ARRSSWR--------VISSIEQKTXGSXRKQQMAKEYXVKVQKELREICYDVLGLLDKHL 442
              R S++        + SS++++T     KQQ   +   +V+  + E    V G+  +HL
Sbjct: 3183 CLRKSYQESAFLDLLITSSLQKQTKQIKEKQQAVMKDLAQVEPAVDEARQAVKGIKKQHL 3242

Query: 443  I 445
            +
Sbjct: 3243 V 3243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,462,820
Number of Sequences: 59808
Number of extensions: 367326
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)