Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.)             115   4e-26
SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9)             29   4.2  
SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)              28   7.4  

>SB_19017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score =  115 bits (276), Expect = 4e-26
 Identities = 48/92 (52%), Positives = 64/92 (69%)
 Frame = +3

Query: 315 LMISDTHLLGPXXGHWLDKMXREWQMHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNNKXF 494
           +M++DTHLLGP  GHW DK+ REWQM + FQT + +  P+ VFVLGDLFDE    +++ F
Sbjct: 1   MMLADTHLLGPIDGHWFDKLRREWQMRRTFQTALTLFRPEAVFVLGDLFDEGMACSDEEF 60

Query: 495 QXYVERFYXLFMVPPHVKMYVVAXNHDIGFHN 590
           + Y  RF  LF  P  ++ +VV  NHDIGFH+
Sbjct: 61  EDYFARFNRLFYHPDDIEFHVVFGNHDIGFHD 92


>SB_57033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 483 YLSILXHQINHLKQIQRQGSASSL*FEM-LDASATRVSFYPA 361
           Y +++ HQ NHL+ I  + S +S  F + +  S T V F PA
Sbjct: 325 YCALMAHQENHLQTIVDKFSEASKLFGLTISLSKTEVLFQPA 366


>SB_36804| Best HMM Match : tRNA_int_endo (HMM E-Value=3.9)
          Length = 229

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 483 YLSILXHQINHLKQIQRQGSASSL*FEM-LDASATRVSFYPA 361
           Y +++ HQ NHL+ I  + S +S  F + +  S T V F PA
Sbjct: 13  YCALMAHQENHLQTIVDKFSEASKLFGLTISLSKTEVLFQPA 54


>SB_2776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1792

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 185 YIFCDSSHDDLDIVVLLPKCEEYR 114
           YIFCDS   ++  VV LP+ EE R
Sbjct: 360 YIFCDSKFFEVQSVVPLPEEEELR 383


>SB_40766| Best HMM Match : WD40 (HMM E-Value=1.19993e-41)
          Length = 1487

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 71  FSNWNSI*IYXKHSLDTLHILVIKQLCLSHHATSHKKCTFISYW 202
           +S W  + I     L+  H+ V K+    +HA S     F   W
Sbjct: 427 YSRWLPVYISDMRQLEVKHLRVFKEFMAGNHAVSRSGQPFSQVW 470


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,912,962
Number of Sequences: 59808
Number of extensions: 285245
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)