Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_O01
         (640 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53710.1 68414.m06112 calcineurin-like phosphoesterase family...    36   0.017
At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family pr...    27   7.9  

>At1g53710.1 68414.m06112 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 393

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +3

Query: 390 MHQAFQTIMMMLSPDVVFVLGDLFDEXEWTNNKXFQXYVERFYXLFMVPPH-----VKMY 554
           M ++F   ++   PDVV  LGD FD   + + + +Q  + R   +F +        +  +
Sbjct: 88  MRRSFFRSVLPFKPDVVLFLGDYFDGGPFLSEEEWQESLNRLKHVFGLNSEGRVGDIPTF 147

Query: 555 VVAXNHDIGFHNYI 596
            +  NHDIG+   I
Sbjct: 148 YIPGNHDIGYSRVI 161


>At5g62610.1 68418.m07857 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 281

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 474 ILXHQINHLKQIQRQGSASSL*FEMLDASAT---RVSFYPANALXLVPVD 334
           +L   IN+++ +QRQ    S+  E++++ A+    +  +P+  L  +P+D
Sbjct: 198 VLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPID 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,588
Number of Sequences: 28952
Number of extensions: 196968
Number of successful extensions: 361
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)