Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N19
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 40 0.002
SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045) 38 0.007
SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 31 0.80
SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 31 1.1
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9) 29 4.2
SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3) 28 5.6
SB_13716| Best HMM Match : LIM (HMM E-Value=0) 28 5.6
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 27 9.8
SB_308| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +2
Query: 317 DQSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQLAXDFIDTTLNSACALAKHR 481
D S LS P ++L EV+ + + + +LLQ+A DFI+ +NS+ +AKHR
Sbjct: 3 DHQSVCLSDPH-EQLGYEVEDVIDVSVHLS-LLLQVADDFIENVVNSSAQIAKHR 55
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 519 IXNVSGTCGYXVLETMNCGHTREQQLQK 602
+ NV+GTCGY LE N G T++ L++
Sbjct: 60 LENVAGTCGYPDLEQTNSGRTKKLLLRR 87
>SB_38712| Best HMM Match : TFIID_20kDa (HMM E-Value=0.0045)
Length = 90
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/31 (45%), Positives = 25/31 (80%)
Frame = +2
Query: 320 QSSQLLSRPRLQELXREVDPTVQLDEQVEEM 412
Q +Q+L++ R+QEL E+DP Q+D++VE++
Sbjct: 12 QPTQVLTKRRIQELLHEIDPREQMDDEVEDL 42
>SB_18786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1056
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 158 PTIGTVGQGAIQYVNNPMQSPQLQN---TSIQGSP-SQHSPMGTQSQVXKVGQGGAGDQS 325
P+I T G G+IQYV P+ PQ I SP +Q S M T SQ + G +
Sbjct: 542 PSIVTTGTGSIQYVIKPVIKPQSHRYLPMPISVSPGTQSSQMATSSQATVISTASGGIRY 601
Query: 326 SQLLSRP 346
+ L P
Sbjct: 602 TSLTQSP 608
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 32.7 bits (71), Expect = 0.26
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Frame = +2
Query: 332 LLSRPRLQELXREVDPTVQLDEQVEE---MLLQLAXDFIDTTLNSACALAKHR--HAPNV 496
L RP + + E+ V L EQ EE + LQ + T+ + A + + PNV
Sbjct: 949 LTQRPAVAKAVSELKELVSLGEQWEEKAKLCLQARPRHVMATVEAIVKEASNVPVYLPNV 1008
Query: 497 XLXDVXLHLXRQWNMWIPXFGNDELRPYKRAAVTEAHRQRMALIR 631
L ++W+ + NDE PY T R R +R
Sbjct: 1009 SALKESLRKAKEWSDKVDQVQNDEYYPYLDVLETLVMRGRPIPVR 1053
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 167 GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS 283
GT+ A QY+ PM SP ++ GSP P G QS
Sbjct: 164 GTMKSPAQQYLYTPMYSPTQSAPTLSGSPLTVIPPGPQS 202
>SB_50702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 31.1 bits (67), Expect = 0.80
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Frame = +2
Query: 143 QAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGS----PSQHSPMGTQSQ----VXKV 298
Q P T QG Q + P+Q Q Q T QG+ PSQ P GTQ Q +
Sbjct: 480 QQVIQPVWPTQPQGTQQQASQPIQPTQPQGTQQQGTLPIYPSQ--PQGTQQQGTLPIYPS 537
Query: 299 GQGGAGDQSSQLLSRPRLQELXREVDPTVQLDEQ 400
G Q +Q + +P Q + V PT+Q Q
Sbjct: 538 QPQGTQQQGTQPM-KP-TQPWTQPVQPTIQQGTQ 569
>SB_6163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Frame = +2
Query: 314 GDQSSQLLSRPRLQELXREVDPTVQ-----LDEQVEEMLLQLAXDFIDTTLNSACALAKH 478
GD++SQ P LQ L V TVQ L E+V MLL++ D ++ L+S L +H
Sbjct: 68 GDENSQ--RTPDLQSLGDRVYGTVQQLYPTLAERVTGMLLEMPADQLNHLLDSREGLLEH 125
Query: 479 RH 484
H
Sbjct: 126 IH 127
>SB_47417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 199
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 546 IHMFH*RXKCXCTSXSXTFGACLCLARAQA 457
IH+++ K C+ + + GACLCL A A
Sbjct: 105 IHVYNQAIKVYCSQGNTSLGACLCLELADA 134
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 30.7 bits (66), Expect = 1.1
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +2
Query: 140 AQAANMPTI--GTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQS-QVXKVGQGG 310
A+ A++P G + ++P S +TSI GSP SPM + + G+
Sbjct: 155 ARPASLPVSVPGVAMAATMTLADSPSSSHGSPHTSITGSPCP-SPMPRDDYEPSESGESE 213
Query: 311 AGDQSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQLAXD 433
D ++LS P ++V+PT + D++ ++M +L D
Sbjct: 214 QDDSEVKMLSPP------KKVEPTAE-DQEFQQMFERLMVD 247
>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 125 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ 280
+NNSL Q AN P + Q NNP+ +P+ + + + P G Q
Sbjct: 45 ANNSLTQQANNPLTQQANKSLTQQANNPL-TPKGKQPNQPTDQQPNKPTGQQ 95
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/84 (25%), Positives = 29/84 (34%)
Frame = +2
Query: 125 SNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQ 304
+N Q N PT Q Q N P P Q T+ P+ T +
Sbjct: 221 TNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTN 280
Query: 305 GGAGDQSSQLLSRPRLQELXREVD 376
A Q++ S+P Q R +D
Sbjct: 281 QPANLQTTHAPSQPADQPTNRSLD 304
>SB_34259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = -1
Query: 322 LVTSSALANFXYL*LGPHRAVLRRRTLNRSVLKLRTL--HGIIN 197
++ ++A++ + + LG HR + RRT + S+ L+T+ H +IN
Sbjct: 42 MIGATAISTYTLVLLGRHRDLHYRRTWDMSITLLKTIDTHHVIN 85
>SB_19932| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2201
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 167 GTVGQGAIQYVNNP--MQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQGGAGDQSSQLLS 340
GTVG Q + P +Q QN +QG P PMG + + G G Q Q+
Sbjct: 544 GTVGPRGPQGFSGPRGLQGTPGQN-GLQGPPGPQGPMGVNNSIGP--PGPPGPQGPQVYF 600
Query: 341 RPRLQELXRE 370
R + L R+
Sbjct: 601 RRAVGNLNRQ 610
>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 374 DPTVQLDEQVEEMLLQLAXDFIDTTLNSACAL 469
D V + E +E+ + +A I TTLNS CA+
Sbjct: 449 DDRVAIHEAMEQQTISIAKAGITTTLNSRCAV 480
>SB_14991| Best HMM Match : PI3_PI4_kinase (HMM E-Value=1.9)
Length = 235
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 219 GLCMGLLTYCIAP*PTVPIVGIFAACARELLDIYTFNTTNEKTSRIKTIIF 67
G CM + C+ T+P + AA R L +++ TT EK +++ IF
Sbjct: 161 GYCMEDIIKCLQVPLTMPAKEVRAAGVRALRHLFSDKTTFEKMLKVRMDIF 211
>SB_14177| Best HMM Match : MMR_HSR1 (HMM E-Value=3)
Length = 302
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +2
Query: 47 SEISKCLKIIVFIRDVFSFVVLKV*MSNNSLAQAANMPTIGTVGQGAIQYVNNPMQSPQL 226
+++ K L++ +R VV+ S S +G +GQ QY NP P+
Sbjct: 180 TQVKKALELYEQLRQRMGVVVIGPSGSGKSTIWRLLRLALGKIGQTVKQYTMNPKAMPRT 239
Query: 227 QNTSI 241
Q ++
Sbjct: 240 QGVTL 244
>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
Length = 401
Score = 28.3 bits (60), Expect = 5.6
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Frame = +2
Query: 161 TIGTVGQGAIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQ-SQVXKVGQGGAGDQSSQLL 337
T G A + +++ M S L + + S +Q + TQ S V +V QGG S
Sbjct: 179 TPGRTASTATKELDDLMAS--LSDFKVNVSGAQSPTLVTQVSHVSQVNQGGPARHSGDYA 236
Query: 338 SRPRLQELXREVDPTVQLDEQVEEMLLQLAXDF----IDTTLNSACA 466
+ + P+V Q++ ML L D + TT CA
Sbjct: 237 KPQKQKTPSGSAAPSVGKVSQLDNMLGSLQSDMTRQGVSTTKKGMCA 283
>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 114 FNTTNEKTSRIKTIIFKHFEISEMSVSIRVYLF 16
+NTTN T K F E+SVS+R ++F
Sbjct: 578 YNTTNHMTRSFTITGLKKFTYYEVSVSVRNHVF 610
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 263 SPMGTQSQVXKVGQGGAGDQSSQLLSRPRLQELXREVDPTVQLDEQVEEMLLQ 421
SP + S K+G+GG + + + R Q DPT +D++ E+ LLQ
Sbjct: 489 SPCSSGSSGCKLGKGGKKRRGERARQKMRNQRHSPPGDPTELMDDE-EKRLLQ 540
>SB_308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = +2
Query: 185 AIQYVNNPMQSPQLQNTSIQGSPSQHSPMGTQSQVXKVGQ--GGAGDQSSQLLSRPRLQE 358
A+Q+V +P+ + + G+PS H+P+ S G AG S + R +E
Sbjct: 36 AVQHVGSPVAGESQGHEDVFGTPSTHTPVPESSSAWSASSVIGVAGLLVSLIGLYTRRRE 95
Query: 359 LXREVDPTVQLDEQVEE 409
L T ++++ E
Sbjct: 96 LAAASTRTPAVNQRATE 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,910,552
Number of Sequences: 59808
Number of extensions: 287640
Number of successful extensions: 687
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -