Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_N13
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 29 2.1
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 3.7
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 28 4.9
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 4.9
SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3) 28 4.9
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 27 8.6
SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1) 27 8.6
SB_39744| Best HMM Match : Sybindin (HMM E-Value=3.6) 27 8.6
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 384 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQA 235
G PC+RC + P P R + WR LA ALS +T + A
Sbjct: 95 GQNNPCSRCGLLSCPTTTSP-EKRRKTPSWRTLAPALSPSATQPAACYDA 143
>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 30.3 bits (65), Expect = 0.92
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 372 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALL 229
P +RC + P P + R + L WR LA ALS +T + A L
Sbjct: 54 PWSRCGLLSCPTTTSPAKRR-KTLSWRTLAPALSPSATQPDACCDAAL 100
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -3
Query: 384 GAPRPCARCSASTVPKPPWPCR-----SRLRALPWRLLAKALSCCSTDSEPS 244
G P P C +P PP C+ S L A + + +L C +D PS
Sbjct: 123 GIPSPLVACKFDDIPSPPVACKFDDIPSTLVACEFDGIPSSLVTCESDGIPS 174
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = -3
Query: 384 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDL 205
G P P + +P PP C+S +P L+A C D PS L +C S +
Sbjct: 183 GIPSPLVAYGSDGIPSPPVACKS--DGIPSTLVA-----CKFDGIPS---SLVACKSDGI 232
Query: 204 VSELNCC 184
S L C
Sbjct: 233 TSSLAAC 239
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 318 NGKAKEAL---EQSRQNIERTAEELRKAHPDVEK 410
NGKA E + E+ IE E++RKA+ ++EK
Sbjct: 1930 NGKATEMVKKNEEKNNEIEEMREKMRKANEEIEK 1963
>SB_36233| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 571
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 119 RRTIAALGQSDAGEENYELGGHDVLSR 39
R+ +AALG + G Y +GGHD R
Sbjct: 355 RKEVAALGVASFGNYIYAIGGHDNTGR 381
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +2
Query: 101 RQRWCDAXXXXXXXXXXXXXXQFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 277
RQ C A + K +QQF+S K+ D D S K+ + ++ L+
Sbjct: 455 RQEQCSADIDSARRSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 318 SRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNCCSKVLWNCL 160
S L + W L + + C + D PS L +C D +SE + C K LW L
Sbjct: 420 SALSLITWNELERGI-CGNPDVSPS--VLKSACKYGDDLSESSECIKFLWAAL 469
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 306 LGDANGKAKEALEQSRQNIERTAEELRKAHPDVEK 410
L + N K K+ALE+ R+ ++ +E ++ D+E+
Sbjct: 1961 LAEQNEKLKDALEELREAVQHLWDEKKEKERDIEQ 1995
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 324 KAKEALEQSRQNIERTAEELRKAH 395
KAKEAL + + ++ T E+L+ AH
Sbjct: 1829 KAKEALSKENKELKGTVEQLQDAH 1852
>SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3)
Length = 367
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = -1
Query: 122 SRRTIAALGQSDAGEENYELGGHDVLSRD*VR 27
S RT + G + AG+E YEL DV SRD VR
Sbjct: 151 SDRTNQSCGAAPAGQEKYEL---DVSSRDVVR 179
>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1149
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 294 SRAALGDANGKAKEALEQSRQNIERTAEELRKA 392
+++ DA AK E +Q IER E+LRKA
Sbjct: 1019 AKSGSSDALAAAKAREENLKQQIERLNEDLRKA 1051
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 375 RPCARCSASTVPKPPWPCRSRLRALP 298
+ C C P PP PC+ R+ LP
Sbjct: 121 KSCFSCRRRQQPPPPPPCQQRMADLP 146
>SB_32529| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 1841
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 369 CARCSASTVPKPPWPCRSRLRALPW 295
C R ST P PP P RS +R L W
Sbjct: 1485 CIRGFVSTDPPPP-PLRSTVRCLTW 1508
>SB_287| Best HMM Match : Pentapeptide (HMM E-Value=0.1)
Length = 288
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 123 RSRLLQGHRTPHQGSSIRL*NNSLTRSPSQRTHRTSARLGRT 248
R+R+ + H T + + R+ LTR+ RTH T R+ RT
Sbjct: 195 RTRVTRTHLTRTRVTRTRVTRTHLTRTRVTRTHLTRTRVIRT 236
>SB_39744| Best HMM Match : Sybindin (HMM E-Value=3.6)
Length = 211
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 179 LEQQFNSLTKSKDAQDFSKAWKDGSESVLQQL 274
L Q LTK +D+S+AW G E +LQ++
Sbjct: 125 LAQASTKLTKRLTTKDWSRAWSSG-ELILQKM 155
>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 415
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 179 LEQQFNSLTKSKDAQDFSKAWKDGSESVLQQL 274
L Q LTK +D+S+AW G E +LQ++
Sbjct: 304 LAQASTKLTKRLTTKDWSRAWSSG-ELILQKM 334
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,122,132
Number of Sequences: 59808
Number of extensions: 217747
Number of successful extensions: 754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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