Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N13
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46900.1 68418.m05781 protease inhibitor/seed storage/lipid t...    29   2.3  
At4g35295.1 68417.m05016 homoserine kinase, putative / HSK, puta...    28   3.0  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   4.0  
At5g19170.1 68418.m02283 expressed protein predicted proteins, A...    27   5.3  
At2g06750.1 68415.m00753 hypothetical protein similar to At5g282...    27   5.3  
At5g51370.1 68418.m06369 F-box family protein similar to unknown...    27   7.0  
At3g59080.1 68416.m06586 aspartyl protease family protein contai...    27   7.0  
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr...    27   9.3  

>At5g46900.1 68418.m05781 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 127

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/93 (22%), Positives = 34/93 (36%)
 Frame = -3

Query: 390 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASF 211
           PC  P P +       P P   C+    AL  ++ A  L        P+           
Sbjct: 26  PCPPPPPKSHHKKPATPSPKPTCKD---ALKLKVCANVLDLVKVSLPPTSNCCALIKGLV 82

Query: 210 DLVSELNCCSKVLWNCLGVVFDVLEEVGSVASH 112
           DL + +  C+ +  N LG+  +V   +  V +H
Sbjct: 83  DLEAAVCLCTALKANVLGINLNVPISLNVVLNH 115


>At4g35295.1 68417.m05016 homoserine kinase, putative / HSK,
           putative similar to homoserine kinase [Arabidopsis
           thaliana] GI:4927412
          Length = 111

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 137 KKSGASRRTIAALGQSDAGEENYELG 60
           K++GA  RTI A+   D  E+ YE+G
Sbjct: 53  KEAGAFGRTITAVAVIDTAEKGYEIG 78


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -2

Query: 247 VLPSLAEVLCVL*LGERVKLLF*SLMELPWCGV 149
           ++P+L+ +  +L LG  + ++  S++EL W GV
Sbjct: 787 IIPTLSNLASMLFLGLFISIILTSVLELRWSGV 819


>At5g19170.1 68418.m02283 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 391

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 206 W*AS*TVVLKSYGTALVWCSMSLKKSGASRRTIAALGQSDAGEENY 69
           W A     L  Y TA+ W    L ++ +S  T+A +G  +  ++ Y
Sbjct: 266 WPAVIFTTLSDYATAVEWGGEVLYRNLSSVNTVAQMGSGEYADKGY 311


>At2g06750.1 68415.m00753 hypothetical protein similar to At5g28270,
           At2g12100, At2g05450, At1g45090, At2g16180
          Length = 435

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 300 PWRLLAKALSCCSTDSEPSFQALLKSCASF 211
           PW+ LA AL     +   SF   L  CASF
Sbjct: 133 PWKKLALALIIIVVEGRTSFLLTLDRCASF 162


>At5g51370.1 68418.m06369 F-box family protein similar to unknown
           protein (emb|CAB82288.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 355

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 273 SCCSTDSEPSFQALLKSCASFDLVSELNCC 184
           SC   D+ P  + LL+SC + + +    CC
Sbjct: 286 SCRKIDASPGPEKLLRSCPAMESLQLKRCC 315


>At3g59080.1 68416.m06586 aspartyl protease family protein contains
           similarity to CND41, chloroplast nucleoid DNA binding
           protein (GI:2541876) [Nicotiana tabacum]; contains Pfam
           profile PF00026: Eukaryotic aspartyl protease
          Length = 535

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 363 RCSASTVPKPPWPCRSRLRALPW 295
           RC+  + P PP PC+S  ++ P+
Sbjct: 229 RCNLVSSPDPPMPCKSDNQSCPY 251


>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
           domains; weak similarity to HPSR2 - heavy chain
           potential motor protein (GI:871048) [Giardia
           intestinalis]
          Length = 702

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 294 SRAALGDANGKAKEALEQSRQNIERTAEELRKAH 395
           ++AAL +    + +AL +     ER AEE R AH
Sbjct: 368 NQAALNEGKLSSLQALREELATTERRAEEERSAH 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,902,192
Number of Sequences: 28952
Number of extensions: 145127
Number of successful extensions: 603
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)