Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N09
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)                        30   0.79 
SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)                    28   4.2  
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)           27   7.4  
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)                 27   9.7  
SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_15911| Best HMM Match : Sec7 (HMM E-Value=0)
          Length = 1220

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 230 LRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIXFAAFLTVLVRDT 51
           L  L+ C+ N   +F    + + AI  ++ + +SK+ V+ V     +  A FLT+L    
Sbjct: 568 LELLLSCLQNAGPVFCNHEMFITAIKQYLCVALSKNGVSSVPSVFELSLAIFLTLLSSFK 627

Query: 50  TH 45
           TH
Sbjct: 628 TH 629


>SB_24497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = +1

Query: 73  KKAAXIIIEKYYTRLTLDFDTNKRI--CEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 246
           K  + II   + T+L       K I  C E   + ++P+  ++     H+M R +H  +R
Sbjct: 43  KNPSIIITTNFRTKLATTLPPKKNIDMCPEFDAVTSQPVTAEVPRQTNHVMTRSQHRILR 102

Query: 247 G 249
           G
Sbjct: 103 G 103


>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 736

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +1

Query: 247 GISIKLQEEERERRDNYVPXVSALEHDIIEVDPDTXDMLKMLDFNN-----INGLQLTQP 411
           G+    +E +RE    Y   VSA +H +     D    + +LD N+      +GL +T  
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515

Query: 412 ATQGGYGG 435
            ++G  GG
Sbjct: 516 ISEGAGGG 523


>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 103 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 192
           YY++LT D+D+ K    EI I+P+ P+  K
Sbjct: 14  YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42


>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
          Length = 1217

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +1

Query: 151 EEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPXVSALEHDI 330
           + +  +P++ LRN++   +  L R +   Q   I  K +EE+ +   NY+   +  EH +
Sbjct: 456 KNLQAMPSEGLRNQLTLMSVALQRSIFTIQHDHIKAKKREEQEQMAQNYL-RTARKEHKL 514

Query: 331 I 333
           +
Sbjct: 515 M 515


>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
          Length = 1458

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 298 VPXVSALEHDIIEVDPDTXDMLKMLDFNNINGLQLT 405
           VP V ALE    +  PD  DMLK  D  +I G+ +T
Sbjct: 834 VPFVEALEKTRAQYYPDEIDMLK--DAVSIPGISMT 867


>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 125 ILIQIKEYVKKSLSFLPSLLGIKLLDL 205
           +L  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,623
Number of Sequences: 59808
Number of extensions: 208841
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)