Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N05
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             31   0.59 
SB_43750| Best HMM Match : NAP (HMM E-Value=3.3)                       29   2.4  
SB_46782| Best HMM Match : DUF1610 (HMM E-Value=0.97)                  27   9.7  
SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
 Frame = -2

Query: 190  GTDDVETTDVVGSL--HAASILNELW-----LDMAQKNKNCKILISRYGVLQAC 50
            GTD++  ++V+  L  HA +   + W     L   +KN+NC  L++ Y V++ C
Sbjct: 1808 GTDELPKSEVIAFLQQHADTAFLKKWKLTGTLKAIRKNRNCSQLVAAYKVIRNC 1861


>SB_43750| Best HMM Match : NAP (HMM E-Value=3.3)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 229 KSIHLNEHPXXXXXXXXXXLQYL--PWYSTIHQLTMFPISARICKLKATVITGRQNR 393
           +SI +  H           L+Y   PW   +H+L++   SARIC++      GR N+
Sbjct: 30  QSICIGSHGTKFRKRWNSILEYQLKPW---VHKLSLRATSARICQVSGAFFPGRVNK 83


>SB_46782| Best HMM Match : DUF1610 (HMM E-Value=0.97)
          Length = 451

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 363 SDSDNGETEQVTPTTPSKGKNAXKKERL 446
           SD ++ E E+ TP TP+K K+  K  RL
Sbjct: 255 SDEEDSEKEK-TPVTPTKSKSPTKIRRL 281


>SB_30755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 360 ESDSDNGETEQVTPTT-PSKGKNAXKKERLKKLE 458
           ++DSDNG+ +QV P++ P K      K++  K++
Sbjct: 74  DNDSDNGDIDQVLPSSFPEKLSKNDDKQKTDKVK 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,986,975
Number of Sequences: 59808
Number of extensions: 329662
Number of successful extensions: 1034
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)