Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N05
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05960.1 68414.m00625 expressed protein similar to hypothetic...    29   3.4  
At4g26150.1 68417.m03764 zinc finger (GATA type) family protein ...    28   6.0  
At2g17280.1 68415.m01996 phosphoglycerate/bisphosphoglycerate mu...    27   7.9  

>At1g05960.1 68414.m00625 expressed protein similar to hypothetical
           protein GB:AAF80120 GI:8810459 from [Arabidopsis
           thaliana ]
          Length = 982

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/72 (30%), Positives = 30/72 (41%)
 Frame = -2

Query: 418 PFDGVVGVTCSVSPLSLSLSICKFWHLLETSLIDELLNTMVGTVTSDLCFFFDFLGVRLG 239
           P D  +G  C  +  +  L I K    LE     EL N  +G+V   LC +   L     
Sbjct: 49  PNDRKIGKLCEYASRN-PLRIPKITEYLEQKCYKELRNGNIGSVKVVLCIYKKLLSSCKE 107

Query: 238 ESTLFSFIALSL 203
           +  LFS   LS+
Sbjct: 108 QMPLFSCSLLSI 119


>At4g26150.1 68417.m03764 zinc finger (GATA type) family protein
           Arabidopsis thaliana mRNA for GATA transcription factor
           3, PID:e1254739
          Length = 352

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -2

Query: 400 GVTCSVSPLSLSLSICKFWHLLETSLIDELLNTMVGT--VTSDLCFFFDFLGVRLGESTL 227
           GV   +SPL L ++ CK    LE + + E L T   +  ++S    +FD L + L +S+ 
Sbjct: 267 GVYKILSPLPLKVNTCKRMITLEETALAEDLETQSNSTMLSSSDNIYFDDLALLLSKSSA 326

Query: 226 F 224
           +
Sbjct: 327 Y 327


>At2g17280.1 68415.m01996 phosphoglycerate/bisphosphoglycerate
           mutase family protein contains Pfam profile PF00300:
           phosphoglycerate mutase family
          Length = 271

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 501 VQNSQYLFNYFGSPTNSTFSVHEYFTQQITPL 596
           V+++Q + N  G   +S +S  +YF   +TPL
Sbjct: 20  VRHAQGIHNVAGEKDHSAYSSEDYFDAHLTPL 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,834
Number of Sequences: 28952
Number of extensions: 232311
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)