Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_N03
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)                   35   0.050
SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)            34   0.12 
SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   2.8  
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)                29   4.4  
SB_50992| Best HMM Match : HpcH_HpaI (HMM E-Value=1e-10)               28   7.6  
SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07)                      28   7.6  

>SB_46563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/50 (58%), Positives = 36/50 (72%)
 Frame = +3

Query: 315 NQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACE 464
           N+KY  A   AI +M    +   +LDIGTGTGLL++MAAKSGADT+ ACE
Sbjct: 1   NKKYYSATVDAIKRMKASNRSVKMLDIGTGTGLLAMMAAKSGADTVTACE 50


>SB_52816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1622

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = +3

Query: 291 DMLHDTXRNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSG-ADTIVACEA 467
           +ML D  R + Y    ++AI +     K   VLD+G GTG+LS+  A+ G A  + A EA
Sbjct: 128 EMLKDKPRTESY----RMAIEQGAGYFKDKVVLDVGCGTGILSLFCAREGKASKVYAVEA 183

Query: 468 FQPMAECCLXILECNGVADKVTVIPKRSTELTVGENGDMKQKANILVTEVFDTELIGE 641
            + +A+    I++ N + DK+TVI  +  E+      ++ +K +I+V+E   T L+ E
Sbjct: 184 SE-IAKLTEEIIKQNNLDDKITVIQGKIEEV------ELPEKVDIIVSEWMGTFLVFE 234


>SB_23832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +3

Query: 294 MLHDTXRNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVAC 461
           ML+D  RN  Y KA+  A+    ++G    VLDIG+G+G+LS+ A ++GA  + AC
Sbjct: 140 MLNDRQRNLAYKKAISNAV----SNGCDI-VLDIGSGSGILSMFAVQAGAKKVYAC 190


>SB_23673| Best HMM Match : DUF855 (HMM E-Value=0.52)
          Length = 380

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 15/25 (60%), Positives = 20/25 (80%)
 Frame = +3

Query: 384 VLDIGTGTGLLSIMAAKSGADTIVA 458
           VLD+G GTG+LS+ AAK+GA  + A
Sbjct: 188 VLDVGCGTGILSMFAAKAGAKHVYA 212


>SB_29686| Best HMM Match : Mit_preoteolip (HMM E-Value=6.3)
          Length = 59

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +3

Query: 303 DTXRNQKYSKALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEA 467
           D+ R   Y +A+   +     D +   V+D+G G+G+LS  A ++GA  + A EA
Sbjct: 1   DSIRTSTYQRAMLQNVA----DFQDKVVIDVGAGSGILSFFAIQAGARKVYAIEA 51


>SB_55800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 186 KVFTQKRNPLTGCTEWDMQDEXNDYHQE 269
           KV      PLT C +WD   +  D HQE
Sbjct: 27  KVLIPLALPLTDCAQWDSMSKTTDSHQE 54


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 507 CNGVADKVTVIPKRSTELTVGENGDMKQKANILVTEVFDTELIGEG 644
           C  + DK TVI        V E    K+KANIL+      +++G+G
Sbjct: 309 CLVIQDKSTVISVEVVRSFVNEVSSQKEKANILIPGADMKKMLGDG 354


>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2103

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 153  KSCVSRIGSKMKVFTQKRNPLTGCTEWDMQDEXNDYHQEIARSAFADMLHDTXRN 317
            +SC+S       V  +KR  L G   WDM ++  D  +  A     D + D+ R+
Sbjct: 1666 QSCLSHCYETAIVMPRKRIRLNGIPRWDMLEDRVDGRRVFAAGESRDEMIDSSRS 1720


>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 26.2 bits (55), Expect(2) = 2.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 234 DMQDEXNDYHQEIARSAFADMLHDTXRNQKYSKALKLAIXKMHNDGKKA 380
           + +DE  D  QEI   +  D L+ T  +  Y K  KL I   +  G  A
Sbjct: 847 EAEDEIEDIQQEITVLSQCDSLYVTKYHGSYLKGTKLWIIMEYLGGGSA 895



 Score = 21.4 bits (43), Expect(2) = 2.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 354 KMHNDGKKANVLDIGTG 404
           K+H D K ANVL   TG
Sbjct: 928 KLHRDIKAANVLMSETG 944


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 372 KKANVLDIGTGT-GLLSIMAAKSGADTIVACEAFQPMAECCLXILECNGVADKV 530
           K+  VLD G+G  G    +AA +G   +VA E  + M E  + + +  G++DKV
Sbjct: 67  KEHTVLDFGSGLGGPARHLAANTGCH-VVALELQEDMHESAIDLTKRCGLSDKV 119


>SB_7201| Best HMM Match : ketoacyl-synt (HMM E-Value=0)
          Length = 1821

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = +3

Query: 333  ALKLAIXKMHNDGKKANVLDIGTGTGLLSIMAA------KSGADTIVACEAFQPMAECCL 494
            A+K ++  + +DGK     +  TG  +LS  ++      +     +   E+F+ M   C 
Sbjct: 1484 AMKRSLSSLKHDGKLVVACEDFTGQAILSGRSSICYDRIRPSELLMGTNESFEEMWLSCQ 1543

Query: 495  XILECNGVADKVTVIPKRSTEL 560
             +L   GV  K+ V+P+ +T +
Sbjct: 1544 SMLMRTGVLQKLLVVPQETTSV 1565


>SB_50992| Best HMM Match : HpcH_HpaI (HMM E-Value=1e-10)
          Length = 679

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
 Frame = +3

Query: 90  MNTIYKVTFFNYLLASSHKRFKSCVSRIGSKMKVFTQ--------KRNPLTGCTEWDMQD 245
           +  +++  FFN LL SS  R   C +   S+  +F           R+P       DM+D
Sbjct: 4   LQNVWRPAFFNCLLRSSIPRRYHCTAP-SSRSWLFVSDPSLCNKASRSP-ADVVVLDMED 61

Query: 246 EXNDYHQEIARSAFADMLHDTXRN 317
             +++ +   R +FAD+L     N
Sbjct: 62  GVSEHLKSFTRHSFADVLQSNSLN 85


>SB_8278| Best HMM Match : MTS (HMM E-Value=4e-07)
          Length = 254

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 369 GKKANVLDIGTGTGLLSIMAA 431
           G+   +L+IG GTGL SIMAA
Sbjct: 71  GEAFALLEIGCGTGLTSIMAA 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,245
Number of Sequences: 59808
Number of extensions: 355356
Number of successful extensions: 784
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)