Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M24
         (435 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   9e-08
SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)             29   2.2  
SB_57279| Best HMM Match : Adeno_E3A (HMM E-Value=8.6)                 28   3.8  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   3.8  
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)                       28   3.8  
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)                   28   3.8  

>SB_17502| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +1

Query: 298 QRVDYIIKDSKGHILSXKDTVTKGKFSFVTXNYDMFEVCFISK 426
           Q+ +  + DS GH+   +D  TKGKF+F T +YDM+EVCF S+
Sbjct: 115 QKTNLKVTDSTGHVFYKRDDATKGKFAFTTDDYDMYEVCFDSE 157



 Score = 31.9 bits (69), Expect = 0.23
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +3

Query: 192 AIMWSLAPNTHKCLKEELHANVLXAGXYDVTEIQGAKS 305
           ++ ++L+    KCLKEE+H +VL  G + +++    K+
Sbjct: 80  SLSFTLSSGNRKCLKEEVHKDVLVTGEFTLSDAPQQKT 117



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 337 ILSXKDTVTKGKFSFVTXNYDMFEVCF 417
           +L  K+  TKGKF+F       F++CF
Sbjct: 317 LLFTKENATKGKFAFTFDRDGHFDLCF 343


>SB_21492| Best HMM Match : Ion_trans (HMM E-Value=1.3e-05)
          Length = 1130

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -1

Query: 132  LWLYIXYLAINKAEFITFMTGKTNIISNFTSNRPMSW 22
            +W Y+ Y+ + + +  T  TG  + +S+ T ++ + W
Sbjct: 1046 MWHYLYYIVLLRVKDPTEFTGPESYVSHMTKDKNLDW 1082


>SB_57279| Best HMM Match : Adeno_E3A (HMM E-Value=8.6)
          Length = 263

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 277 SYXPAXNTLACNSSFKHLCVFGAKLHIIASVPCQIKLSNNTR-YCTSMF 134
           SY P+  T+  N + +  CV+   +H +      +K S N R +C+S++
Sbjct: 23  SYVPSSGTMWANETHRLRCVY-PDMHEVEPEDAFVKYSANFRQFCSSLY 70


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 277 SYXPAXNTLACNSSFKHLCVFGAKLHIIASVPCQIKLSNNTR-YCTSMF 134
           SY P+  T+  N + +  CV+   +H +      +K S N R +C+S++
Sbjct: 544 SYVPSSGTMWANETHRLRCVY-PDMHEVEPEDAFVKYSANFRQFCSSLY 591


>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
          Length = 632

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 277 SYXPAXNTLACNSSFKHLCVFGAKLHIIASVPCQIKLSNNTR-YCTSMF 134
           SY P+  T+  N + +  CV+   +H +      +K S N R +C+S++
Sbjct: 71  SYVPSSGTMWANETHRLRCVY-PDMHEVEPEDAFVKYSANFRQFCSSLY 118


>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
          Length = 1487

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 277 SYXPAXNTLACNSSFKHLCVFGAKLHIIASVPCQIKLSNNTR-YCTSMF 134
           SY P+  T+  N + +  CV+   +H +      +K S N R +C+S++
Sbjct: 520 SYVPSSGTMWANETHRLRCVY-PDMHEVEPEDAFVKYSANFRQFCSSLY 567


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,599,164
Number of Sequences: 59808
Number of extensions: 229063
Number of successful extensions: 413
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)