Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M24
         (435 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar ...    36   0.016
At2g03040.1 68415.m00257 transmembrane protein-related low simil...    31   0.25 
At3g52115.1 68416.m05720 hypothetical protein                          27   7.2  
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative...    26   9.5  
At4g33925.1 68417.m04814 expressed protein                             26   9.5  
At3g01015.1 68416.m00001 expressed protein ; expression supporte...    26   9.5  
At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar ...    26   9.5  

>At1g14010.1 68414.m01654 emp24/gp25L/p24 family protein similar to
           SP|P49755 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Homo sapiens};
           contains Pfam profile PF01105: emp24/gp25L/p24 family
          Length = 212

 Score = 35.5 bits (78), Expect = 0.016
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 153 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
           ++L+LS++   T +I + L     KC+ EE+HAN +  G Y +
Sbjct: 9   VLLILSILSPVTLSIRYELLSGHTKCISEEIHANAMTIGKYSI 51


>At2g03040.1 68415.m00257 transmembrane protein-related low
           similarity to SP|Q28735|TM21_RABIT Transmembrane protein
           Tmp21 precursor (21 kDa Transmembrane trafficking
           protein) (Integral membrane protein p23) {Oryctolagus
           cuniculus}
          Length = 166

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 153 LVLLLSLIWHGTDAIMWSLAPNTHKCLKEELHANVLXAGXY 275
           L+L+++L+   T ++ + L  +  KC+ EE+H N +  G Y
Sbjct: 9   LLLIIALLSPRTLSMRYELKSSKTKCIGEEIHENAMSIGKY 49


>At3g52115.1 68416.m05720 hypothetical protein
          Length = 588

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 184 ELMRLCGAWRRTHTSV*KK-NYTPTCXLQXNMM 279
           EL R C  W+  HT + K+ N+TP   L  + +
Sbjct: 323 ELSRTCKKWKSQHTFLCKRFNFTPDSVLHQSSL 355


>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           GI:7673355 from [Nicotiana tabacum]; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 620

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 285 LSHHIXLQXTRWRVILLSNTCVCSAPSS 202
           L+H I ++ TR RVI  +  C+ S  SS
Sbjct: 15  LTHEIKMKFTRLRVIYFTTYCLRSTDSS 42


>At4g33925.1 68417.m04814 expressed protein
          Length = 132

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 46  KIRDYVCFPGHKCYEFGFIY 105
           K  +Y+CFPG  C  + F Y
Sbjct: 70  KREEYLCFPGDYCGCYSFFY 89


>At3g01015.1 68416.m00001 expressed protein ; expression supported
           by MPSS
          Length = 488

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 156 RDIVPPCLLWLYIXYLAINKAEFITFMTGKTNIISNFTSNR 34
           +DI  P  L L+    A+ +AEF   +T K N++  + + R
Sbjct: 366 KDITIPVDLKLHSDIRAVERAEFDYQVTEKINLVEQYKTER 406


>At1g69460.1 68414.m07981 emp24/gp25L/p24 family protein similar to
           SP|Q28735 Transmembrane protein Tmp21 precursor (21 kDa
           Transmembrane trafficking protein) {Oryctolagus
           cuniculus}; contains Pfam profile: PF01105:
           emp24/gp25L/p24 family
          Length = 214

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 150 YLVLLLSLIWHG-TDAIMWSLAPNTHKCLKEELHANVLXAGXYDV 281
           + +LL+  IW   + ++ + L     KC+ E++ +N +  G Y++
Sbjct: 9   WTMLLILAIWSPISHSLHFDLHSGRTKCIAEDIKSNSMTVGKYNI 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,974
Number of Sequences: 28952
Number of extensions: 158737
Number of successful extensions: 321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)