Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M21
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 78 7e-15
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 31 1.1
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 30 1.4
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 2.5
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 4.3
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 4.3
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 29 4.3
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 28 5.7
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 7.5
SB_34845| Best HMM Match : CXC (HMM E-Value=0.03) 27 9.9
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 77.8 bits (183), Expect = 7e-15
Identities = 37/50 (74%), Positives = 40/50 (80%)
Frame = +1
Query: 490 MRGAFGKPQGTVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGTSK 639
MRGAFGKPQGTV RV IGQ I+S+R+ D KA IEALRRAKFKFPG K
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1
Query: 340 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 459
L I C Y KN +D +RM +HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 22/61 (36%)
Frame = -3
Query: 541 QCEHVXQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYGTDPFRSSLRGTYC 362
+C V Q P AC + S GA + Y C K V CG G T C
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKGYYSTNGQTSCTEC 594
Query: 361 S 359
S
Sbjct: 595 S 595
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 152 GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 286
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 343 PKPXSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 227
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 371 YLLQQIRPASKAXELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 240
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 371 YLLQQIRPASKAXELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 240
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
Frame = -3
Query: 430 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PXSSAVHIRRTPSARTVES----- 281
G + GY P+ + S R Y + LPP+ P SS + ++ P + E+
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418
Query: 280 -----RQRSLSSYPNRRYGSWDQVHPDR 212
RQ SY +RRYG ++ +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 93 NIKSVRTTKSVFVYISDHHG 152
N+KS R T +V I DHHG
Sbjct: 907 NVKSSRVTNEKYVGIGDHHG 926
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 7.5
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +3
Query: 498 CVWQASGYCXTCSHWTAHHV 557
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_34845| Best HMM Match : CXC (HMM E-Value=0.03)
Length = 1397
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 274 VDDFPLCVHLVSDEYEQLSSXALEAGRICCNKYLVKNCGKD-QFH 405
+D P C VS YE + + R C K L ++C D +FH
Sbjct: 1061 LDPTPECTERVSKTYESGHTLSTATARQQCLKELKESCNDDLEFH 1105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,965
Number of Sequences: 59808
Number of extensions: 475883
Number of successful extensions: 1336
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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