Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M19
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             310   8e-85
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      31   0.77 
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)                    28   5.4  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         28   5.4  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  310 bits (760), Expect = 8e-85
 Identities = 144/203 (70%), Positives = 166/203 (81%)
 Frame = +1

Query: 7    FFFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLXN 186
            F FS+   + MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFL N
Sbjct: 416  FLFSL-LAAIMARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRN 474

Query: 187  RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGRFT 366
            RLKYAL G EV KIVKQRLIK+DGKVRTD TYPAGFMDVV+I KT E FRL+YDVKGRF 
Sbjct: 475  RLKYALNGEEVKKIVKQRLIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFA 534

Query: 367  IHRITPEEAXYKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 546
            +HRIT EEA YKL +V+RV  G   VPY+VTHD RTIRYPDP IKVND++ +DI T K++
Sbjct: 535  VHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVI 594

Query: 547  DFIKFEXGNLCMITGRP*LGARG 615
            D+IKF+ GN+ M+ G   +G  G
Sbjct: 595  DYIKFDTGNMAMVVGGRNMGRVG 617


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +1

Query: 367 IHRITPEEAXYKLCKVKRVATGPNNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 546
           I  +TP+    K C+V R++TGP+   +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 547 DFIKFEXGNLCM 582
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 193 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIXKTNELFRLIYDVKGR 360
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_31569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 421 VATGPNNVPYLVTHD 465
           VA G NN+PYL THD
Sbjct: 25  VAAGHNNMPYLFTHD 39


>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
          Length = 203

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 179 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 27
           RK +R     N++G ++GLG+  PP  + I     F K  K F  PR    K
Sbjct: 60  RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 257 PSTFMRRCFTIFRTSFPVKAYFRRFXRK------ITRGKHSRNLW 141
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 189 SEVCFDRKRSPENCE 233
           +E+C DRKR P++CE
Sbjct: 81  NELCHDRKRGPDDCE 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,248,420
Number of Sequences: 59808
Number of extensions: 414524
Number of successful extensions: 941
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)