Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M16
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28820.1 68417.m04120 zinc finger (HIT type) family protein c... 49 2e-06
At5g63830.1 68418.m08012 zinc finger (HIT type) family protein c... 45 5e-05
At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger) fa... 31 0.87
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) fa... 31 0.87
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) fa... 31 0.87
At5g56890.1 68418.m07099 protein kinase family protein contains ... 29 2.0
At3g47160.1 68416.m05120 expressed protein similar to MTD2 [Medi... 29 2.7
At1g80870.1 68414.m09489 protein kinase family protein contains ... 29 2.7
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ... 28 4.7
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa... 28 4.7
At5g37055.1 68418.m04446 zinc finger (HIT type) family protein c... 28 6.1
At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein ... 28 6.1
At5g40640.1 68418.m04933 expressed protein 27 8.1
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f... 27 8.1
>At4g28820.1 68417.m04120 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 173
Score = 49.2 bits (112), Expect = 2e-06
Identities = 18/36 (50%), Positives = 24/36 (66%)
Frame = +3
Query: 126 CGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLXCSE 233
C +CE+ SKY CP C + YCSLGC+K K C++
Sbjct: 9 CEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAK 44
>At5g63830.1 68418.m08012 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 343
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/102 (24%), Positives = 43/102 (42%)
Frame = +3
Query: 243 RDWVNEELSSQNVDEESKRKMIEILKKMQNESXXXXXXXXXXXXXXXXXXXXXXXXXRIK 422
RD VN+EL D+++KRKM+EILK+ E I
Sbjct: 2 RDNVNDELKQVRSDDQTKRKMLEILKRFHEEE-----EEDDGGIDSITDDEGLSLPEEII 56
Query: 423 NLXINDADAIWSALTEXEKNEFEALISQXDVGSILPQWEPWW 548
+N + L+ E+ F+ ++ ++ ++ W+PWW
Sbjct: 57 QKIMNGDEVSLDDLSLEERKGFQRALASGELSKMIQPWDPWW 98
>At5g58787.1 68418.m07365 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +3
Query: 69 RIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLXCSENFYRD 248
R DE++ ++I E + CG+C E SK P C C + CY+ + S F RD
Sbjct: 126 RKKDESEMSEI-EIEREEECGICMEMNSKVVLPNCTHSLC-IKCYRDWRGRSQSCPFCRD 183
>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 172
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 69 RIMDETDTTKITENTFAKI--CGLCEEQKSKYCCPKCGILYCSLGCYKS 209
R D TD K++E + CG+C E ++K P C C + CY++
Sbjct: 125 RKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMC-INCYRN 172
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger)
family protein similar to MTD2 [Medicago truncatula]
GI:9294812; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 242
Score = 30.7 bits (66), Expect = 0.87
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 69 RIMDETDTTKITENTFAKI--CGLCEEQKSKYCCPKCGILYCSLGCYKS 209
R D TD K++E + CG+C E ++K P C C + CY++
Sbjct: 125 RKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMC-INCYRN 172
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 246 HDRNFLNTXNVCLIYNNRANNIIYHILGNNTCFSVLHIVHK 124
H RN +N +C+ NR +++Y ++ N + S LH + K
Sbjct: 775 HHRNLVNLIGICIEDRNR--SLVYELIPNGSVESHLHGIDK 813
>At3g47160.1 68416.m05120 expressed protein similar to MTD2
[Medicago truncatula] GI:9294812; supporting cDNA
gi|25083983|gb|BT002136.1|
Length = 245
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 69 RIMDETDTTKITENTFAKI--CGLCEEQKSKYCCPKCGILYCSLGCYK 206
R DET+ K++E + CG+C E + P C C + CY+
Sbjct: 126 RNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLC-IKCYR 172
>At1g80870.1 68414.m09489 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 692
Score = 29.1 bits (62), Expect = 2.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 225 CSENFYRDWVNEELSSQNVDEESKRKMI 308
CS+++ R+W+ ++ + N D + +K+I
Sbjct: 361 CSKDYVREWIGSQIDTANPDWDDDKKVI 388
>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 671
Score = 28.3 bits (60), Expect = 4.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +3
Query: 126 CGLCEEQKSKYCCPKC 173
C C E YCCP+C
Sbjct: 138 CDFCNESGIDYCCPRC 153
>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 255
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 114 FAKICGLCEEQKSKYCCPKCGILYCSLG 197
F KIC L ++++ Y CP C + C +G
Sbjct: 89 FCKICKLYDDERKIYHCPYCNL--CRVG 114
>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 195
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 114 FAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLXC 227
+ KIC L ++ + Y CP C + C LG S + C
Sbjct: 29 YCKICKLFDDDREIYHCPYCNL--CRLGKGLSIDYFHC 64
>At5g37055.1 68418.m04446 zinc finger (HIT type) family protein
contains Pfam profile: PF04438 HIT zinc finger
Length = 171
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 126 CGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLXCSE 233
C +C CC CG+ +CS+ C K C +
Sbjct: 134 CSVCGYIAGYNCC-LCGMRFCSIRCQNIHKDTRCQK 168
>At2g15740.1 68415.m01802 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 329
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/93 (21%), Positives = 42/93 (45%)
Frame = +3
Query: 57 STTRRIMDETDTTKITENTFAKICGLCEEQKSKYCCPKCGILYCSLGCYKSDKHLXCSEN 236
+TT I + + ++ + L E+ Y CPKC ++ + S K +
Sbjct: 211 ATTDYIESQENEKSNNDHNDGRTHSLPYEKYGPYTCPKCNGVFNT-----SQKFAAHMSS 265
Query: 237 FYRDWVNEELSSQNVDEESKRKMIEILKKMQNE 335
Y++ +EE Q + ++KRK ++ +++ E
Sbjct: 266 HYKNETSEE-REQRIRAKNKRKFCKLNREINGE 297
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 119 SKSIFCDLRCICFVHYSSSGTDYHCITIFRRLYYLRL 9
S ++ CD + +CF Y S D T R Y +RL
Sbjct: 142 SFTVVCDFKDVCFHSYFSFMDDLRTSTANRHYYEIRL 178
>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
family protein / zinc finger (MYND type) family protein
similar to ubiquitin-specific protease 15 (UBP15)
[Arabidopsis thaliana] GI:11993475; contains Pfam
profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
PF01753: MYND finger
Length = 631
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 117 AKICGLCEEQKSKYCCPKCGILYCSLGCYKSD 212
A+ C +C +K C + YCS C +SD
Sbjct: 58 AEDCSVCGNFSTKKCSRCKSVRYCSAECQRSD 89
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,879
Number of Sequences: 28952
Number of extensions: 182797
Number of successful extensions: 589
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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