Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M15
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)                    28   7.5  
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)        27   9.9  
SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)                    27   9.9  
SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)                    27   9.9  
SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -3

Query: 525  VDDTIFSGFEHNF----QNIVNKNVVITRNXSNTIQTKVKIYVM--IIKTAHDILPP 373
            +DD    GF   F    +++ N  + + R    +++  VK+ ++    KT HD+LPP
Sbjct: 5080 LDDDAVIGFVQTFKVVPEDVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDVLPP 5136



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
 Frame = -3

Query: 525  VDDTIFSGFEHNF----QNIVNKNVVITRNXSNTIQTKVKIYVM--IIKTAHDILPP 373
            +D+    GF   F    +++ N  + + R    +++  VK+ ++    KT HDILPP
Sbjct: 3846 LDNDAVIGFVQTFKIVPEDVGNATLTVQRTGDTSVEHIVKVTIVDDSAKTGHDILPP 3902


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 91  SLSNTGATCNPYRYNNVLSRRGCVLWDHVPWICTL 195
           SL    A   P+RY  +L++  C +W    W+ +L
Sbjct: 110 SLDRCLAVTKPFRYQQLLTKTRCKIWIAAAWVFSL 144


>SB_3977| Best HMM Match : EGF (HMM E-Value=1.8e-09)
          Length = 108

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +1

Query: 253 DDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSG 372
           D  H   CM+G T I    + L +YRC  PE   G    G
Sbjct: 20  DKCHAMPCMNGGTCI----ATLNNYRCQCPEGYRGSNCEG 55


>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -3

Query: 336 VAPVVKQPRQSNINPSAAMHALPTMNIICRAS-IQINRKWNTSSNIRMESADPRYMVPQN 160
           ++P V  PRQ    P +     P  +I  R S    NR+  +    R  SA  R    + 
Sbjct: 104 LSPPVSTPRQQRHTPPSFT---PRSSISRRRSDTPKNRRRISVPRRRAGSALGRLTTNKK 160

Query: 159 TPTPRQHIIVAIRVACGT 106
           TP  R +++ A R A GT
Sbjct: 161 TPPRRTNLLEAFRAAAGT 178


>SB_26378| Best HMM Match : Transposase_21 (HMM E-Value=2.2e-06)
          Length = 854

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 400 YDHNIYFDLCLDSVAXISSNNNI-FVHNILEI-MFKTRKYCIINLY 531
           YD N+Y +LC   +  +SS +NI F+ N   + +FK+ K  I  LY
Sbjct: 250 YDGNLYHELCQHGI--LSSKDNISFLMNTDGVPVFKSSKVSIWPLY 293


>SB_43587| Best HMM Match : DUF216 (HMM E-Value=3.9)
          Length = 490

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 400 YDHNIYFDLCLDSVAXISSNNNI-FVHNILEI-MFKTRKYCIINLY 531
           YD N+Y +LC   +  +SS +NI F+ N   + +FK+ K  I  LY
Sbjct: 297 YDGNLYHELCQHGI--LSSKDNISFLMNTDGVPVFKSSKVSIWPLY 340


>SB_20222| Best HMM Match : SSF (HMM E-Value=0.0045)
          Length = 471

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 442 AXISSNNNIFVHNILEIMFKTRKYCIINLYRFHSIRLHVSFNG 570
           + + S  ++F HNI +++F+ +  C+I    FH    + SF G
Sbjct: 326 SSVLSAASMFSHNIYKMIFRQKLCCVI---FFHDTNTYGSFTG 365


>SB_10640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 107 VPHATLIATIMCCLGVGVFCG 169
           VPH  +I T+  CLG+G+F G
Sbjct: 940 VPHVEIIITV--CLGIGLFSG 958


>SB_1694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 782

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +1

Query: 400 YDHNIYFDLCLDSVAXISSNNNI-FVHNILEI-MFKTRKYCIINLY 531
           YD N+Y +LC   +  +SS +NI F+ N   + +FK+ K  I  LY
Sbjct: 276 YDGNLYHELCQHGI--LSSKDNISFLMNTDGVPVFKSSKVSIWPLY 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,366,838
Number of Sequences: 59808
Number of extensions: 476732
Number of successful extensions: 1127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)