Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M15
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f...    29   2.0  
At5g48110.1 68418.m05943 terpene synthase/cyclase family protein       29   3.5  
At3g24900.1 68416.m03122 disease resistance family protein / LRR...    29   3.5  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             29   3.5  
At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to vil...    28   4.7  
At3g14740.2 68416.m01864 PHD finger family protein similar to zi...    27   8.1  
At3g14740.1 68416.m01863 PHD finger family protein similar to zi...    27   8.1  

>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 923

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 385 IVCRFYDHNI--YFDLCLDSVAXISSNNNIFVHNILEIMFKTRK 510
           ++   YDH I  YF++ LDS++ I  + +I  + + +I   +RK
Sbjct: 536 LLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRK 579


>At5g48110.1 68418.m05943 terpene synthase/cyclase family protein 
          Length = 575

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 295 IYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDH 408
           ++  +  L+D  C  PE+++  E+  RWE       DH
Sbjct: 327 LWTIIDDLYDAYCTLPEAIAFTENMERWETDAIDMPDH 364


>At3g24900.1 68416.m03122 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 884

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = -3

Query: 540 VKSIQVDDTIFSGFEHNFQNIVNKNVVITRNXSNTIQ 430
           + S+ +++ +F+GFE + + +VN +V I    SN ++
Sbjct: 441 LSSVFIEENLFTGFEGSSEILVNSSVRILNLLSNNLE 477


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 131 TIMCCLGVGVFCGTM-YRGSALSI 199
           T+M CLG+G+ CG + Y GS L +
Sbjct: 556 TMMFCLGLGILCGAVGYLGSNLFV 579


>At3g57410.1 68416.m06391 villin 3 (VLN3) nearly identical to villin
           3 (VLN3) [Arabidopsis thaliana] GI:3415117
          Length = 965

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +3

Query: 477 QYSGNYVQNQKILYHQLV*ISLNSTSCFL 563
           Q SG  V N K L  + V  SLNS  CFL
Sbjct: 524 QVSGTGVHNNKALQVEAVATSLNSYDCFL 552


>At3g14740.2 68416.m01864 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 343

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +1

Query: 247 PADDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYFD 423
           P  D  C +C+    R  +    L    C +        + GRW +I C  +   +YF+
Sbjct: 191 PEGDWFCRQCLSSKNREKIFSCCL----CTTKGGAMKPTNDGRWAHITCALFVPEVYFE 245


>At3g14740.1 68416.m01863 PHD finger family protein similar to
           zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
           contains PHD-finger domain PF00628
          Length = 341

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/59 (23%), Positives = 23/59 (38%)
 Frame = +1

Query: 247 PADDIHCGKCMHGSTRIYVTLSRLFDYRCNSPESLSGVESSGRWENIVCRFYDHNIYFD 423
           P  D  C +C+    R  +    L    C +        + GRW +I C  +   +YF+
Sbjct: 191 PEGDWFCRQCLSSKNREKIFSCCL----CTTKGGAMKPTNDGRWAHITCALFVPEVYFE 245


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,695,509
Number of Sequences: 28952
Number of extensions: 317726
Number of successful extensions: 750
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)