Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M14
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1106

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 401 HGLFLKSPTSSSQEKSIHSTKKTRQTARVASIAFLLIST 285
           HG    SPTS S   ++ STKKT   ++  + A ++ S+
Sbjct: 229 HGQLSSSPTSPSALNTLGSTKKTHHRSKSDATAAIVASS 267


>SB_19778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = -3

Query: 348 QYKEDEADSQSSFHCIPXDFHVKKAVKDVPFCKGTFFVIFVYFHRKQCHNYGTDRRNNRT 169
           QY E    ++ +   +  DF+ K+A+K  P C  +  ++FV+ +    H   T  R  RT
Sbjct: 626 QYTEFVEKAEQAQKTMFLDFNYKRAMKRKPCCAISILMMFVFVNGS--HTVHTYSRYGRT 683

Query: 168 S 166
           +
Sbjct: 684 A 684


>SB_41166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 327 DSQSSFHCIPXDFHVKKAVKDVPFCKGTFFVIFVYFHRKQ 208
           DS + F  +   ++VK A+    FC  T   +F++FH K+
Sbjct: 41  DSGAHFEIVIDVYNVKFALH--VFCVDTIITVFIFFHDKK 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,907
Number of Sequences: 59808
Number of extensions: 297437
Number of successful extensions: 668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)