Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M14
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33020.1 68414.m04066 F-box family protein                          28   3.9  
At2g38890.1 68415.m04780 expressed protein  and genefinder             27   6.8  
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica...    27   9.0  

>At1g33020.1 68414.m04066 F-box family protein
          Length = 548

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 333 EADSQSSFHCIPXDFHVKKAVKDVPFCKGTFFVIFVYFHRKQCHNYGTDRR 181
           E  S   FH    DFH+  +  D+   + T+   F+YF RK+  NY  D R
Sbjct: 83  EKSSLVDFHMNFSDFHMNFS-GDIRRNECTYVSGFIYFPRKRIKNYLCDFR 132


>At2g38890.1 68415.m04780 expressed protein  and genefinder
          Length = 298

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 377 TSSSQ-EKSIHSTKKTRQTARVASIAFLLISTLRKPLKMFPSVKELFSSSSY 225
           TS++Q  KS  +T        VASI F L   LR  L+  P+VK+  +  ++
Sbjct: 89  TSNTQLRKSADTTTTQGSRFSVASIEFDLFHDLRASLRNSPNVKQTVTQETH 140


>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q61687
           Transcriptional regulator ATRX {Mus musculus}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 816

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 345 TVDALLLAATRWTLQKQTVFSAQLSFLRD 431
           +++    AA   TLQ+ T FSA+ S ++D
Sbjct: 490 SIEGTFFAAVELTLQRSTNFSAKASLIKD 518


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,494,449
Number of Sequences: 28952
Number of extensions: 188931
Number of successful extensions: 416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)