Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M10
         (595 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   5.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.8  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 116  CSLQYSRCSGNMVPRNC 166
            CS  Y   +G++VP+NC
Sbjct: 1218 CSSFYVCVNGHLVPQNC 1234


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -1

Query: 118 ALQNALNTLSSGGFPSCTILKLRYRCLNFIKCYLSXRPF 2
           ++  A +T  +  FPS  ++  + R +  + C     PF
Sbjct: 89  SIPGASSTPENKTFPSIQVMGYQGRAVVVVSCVTKDEPF 127


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 185 EVPLVSSKLPSCTDY*P 235
           E+P V    P C DY P
Sbjct: 625 EMPPVPKDFPQCGDYVP 641


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,906
Number of Sequences: 336
Number of extensions: 2412
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14935063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)