Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M10
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)                       35   0.057
SB_785| Best HMM Match : hATC (HMM E-Value=0.13)                       31   0.53 
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              29   2.8  
SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)         28   4.9  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)                      28   4.9  
SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)                28   6.5  

>SB_14331| Best HMM Match : SAG (HMM E-Value=5.7)
          Length = 141

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 21/80 (26%), Positives = 36/80 (45%)
 Frame = +3

Query: 186 KYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRXRAVDSXILSILRQRYEXCMMYEQP 365
           KY   +    R P+ ++    D V   EA  Q+   R V+   +  LR +   C   E+ 
Sbjct: 4   KYFKRYTEKARAPSFEEIDRRDPVAFSEAREQWVLDRLVELETVKELRDQVAHCYRQEEV 63

Query: 366 DHATKCRSLWDKYKSAEEAW 425
           +    CR++ D+Y  A +A+
Sbjct: 64  NARQNCRTIVDQYMQAFKAY 83


>SB_785| Best HMM Match : hATC (HMM E-Value=0.13)
          Length = 205

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +3

Query: 81  PPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRVP 224
           P  D   R F   LYNTV     +  + ++   ++K  W+H +  ++P
Sbjct: 105 PAIDWFLRKFNVQLYNTVPGCEVYVSDVLINTEERKVKWWHDHKEQLP 152


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +3

Query: 144 VTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRXR 296
           + W+++ +   N   + W +      PT++Q +D  VV DFE+    ++ R
Sbjct: 216 MAWWQQFLESWNSVSF-WLYPGLEATPTVEQPFDYLVVIDFESTCWKEKRR 265


>SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)
          Length = 813

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 36  FKQRYLNFNMVQDGNPPDDN 95
           F QR+LN + + DGNP DD+
Sbjct: 170 FGQRFLNTSGLSDGNPVDDD 189


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 84  PDDNVFRAFCNALYNTVDAPVTWFRE 161
           P+D + R  C+++ + V AP+TW R+
Sbjct: 618 PEDEIKRLSCDSIASRVIAPLTWPRD 643


>SB_32075| Best HMM Match : LIM (HMM E-Value=0.44)
          Length = 789

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 110 LQCSLQYSRCSGNMVPRNCCRTKP 181
           L C+ ++ RC  ++  RNC R KP
Sbjct: 764 LSCNRRHKRCHASVTLRNCERVKP 787


>SB_10256| Best HMM Match : RasGEF (HMM E-Value=1.8e-34)
          Length = 792

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 48  YLNFNMVQDGNPPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQKKYPWYHQNYRRV 221
           Y+NF+  + G   D    R FC+ + + V  P+   ++TV E   K+     +  +R+
Sbjct: 200 YINFDKRRKGGQTDQERVRQFCDWILSYVPEPI---KKTVKEAADKRVERLKERIKRL 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,547
Number of Sequences: 59808
Number of extensions: 319220
Number of successful extensions: 1428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1428
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)