Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M10
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 29 2.3
At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related ... 29 3.1
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 28 4.1
At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related ... 28 4.1
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 28 5.4
At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1... 28 5.4
At2g15800.1 68415.m01811 expressed protein and genefinder 28 5.4
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 28 5.4
At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family... 27 9.4
At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi... 27 9.4
At2g22250.2 68415.m02642 aminotransferase class I and II family ... 27 9.4
At1g54350.1 68414.m06196 ABC transporter family protein similar ... 27 9.4
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +3
Query: 153 FRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRXRAVDSXILSILRQ 332
F E V E +K+Y +N R P D+ DDD+ D +F +D IL++
Sbjct: 81 FLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGD-----RFSVAYNLDREFGPILKE 135
Query: 333 RYEXCMMYEQPDHATKCRSL 392
+ CM + P+ +K L
Sbjct: 136 HMQYCMSH--PEEMSKLSKL 153
>At1g49140.1 68414.m05509 NADH-ubiquinone oxidoreductase-related
similar to NADH-ubiquinone oxidoreductase 12 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-12KD) (CI-12KD).
(Swiss-Prot:Q03015) [Neurospora crassa]
Length = 107
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 249 DVVCDFEANAQFKRXRAVDSXILSILRQRYEXCMMYEQPDHATKCRSLWDKYKSA 413
D V E R + + ILR++ + C E +H KCR L +Y A
Sbjct: 26 DPVAMVEMREHIVREKWIHIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQYLDA 80
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 28.3 bits (60), Expect = 4.1
Identities = 26/94 (27%), Positives = 40/94 (42%)
Frame = +3
Query: 141 PVTWFRETVVEPNQKKYPWYHQNYRRVPTIDQCYDDDVVCDFEANAQFKRXRAVDSXILS 320
PV W ET E + P + P+ ++ DDDVV +F ++ R
Sbjct: 1249 PVEWNEETAEEQVGAESPALVTDDTGEPSSER-KDDDVV-NFTEENEWDR---------- 1296
Query: 321 ILRQRYEXCMMYEQPDHATKCRSLWDKYKSAEEA 422
+LR R E + + +W+KY+S EEA
Sbjct: 1297 LLRMRLEFPLSLSSASWLWSWQHIWEKYQSEEEA 1330
>At3g18410.1 68416.m02341 NADH-ubiquinone oxidoreductase-related
similar to NADH-ubiquinone oxidoreductase 12 kDa
subunit, mitochondrial precursor (EC 1.6.5.3) (EC
1.6.99.3) (Complex I-12KD) (CI-12KD).
(Swiss-Prot:Q03015) [Neurospora crassa]
Length = 106
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +3
Query: 249 DVVCDFEANAQFKRXRAVDSXILSILRQRYEXCMMYEQPDHATKCRSLWDKY 404
D V E R + + ILR++ + C E +H KCR L +Y
Sbjct: 26 DPVAMVEMREHIVREKWIQIEKAKILREKVKWCYRVEGVNHYQKCRHLVQQY 77
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 243 DDDVVCDFE-ANAQFKRXRAVDSXILSILRQRYEXCMMY 356
DDD DFE A+AQ++ AV+ S+ R E C Y
Sbjct: 171 DDDSFDDFELADAQYEHALAVERLAPSLASLRIELCPEY 209
>At3g04110.1 68416.m00435 glutamate receptor family protein (GLR1.1)
(GLR1) identical to putative glutamate receptor (GLR1)
GB:AF079998 [Arabidopsis thaliana]; plant glutamate
receptor family, PMID:11379626
Length = 808
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +1
Query: 370 MQLNAGLF--GTSTSLLRKLGSLNMVTSVLMVMRE 468
MQLN + G++TS+ KLGS+N V + ++R+
Sbjct: 632 MQLNHQMVFGGSTTSMTAKLGSINAVEAYAQLLRD 666
>At2g15800.1 68415.m01811 expressed protein and genefinder
Length = 231
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 345 CMMYEQPDHATKCRSLWDKYKSAEEA 422
C E+PDHA WD Y AE +
Sbjct: 183 CYDVERPDHAMDTDDEWDAYDQAERS 208
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 60 NMVQDGNPPDDNVFRAFCNALYNTVDAPVTWFRETVVEPNQK 185
N+V +GNP +D AF + TW + +EP++K
Sbjct: 792 NIVYNGNPLNDLSLTAFLDKFMEKKPKQNTWHGGSQIEPSKK 833
>At4g25620.1 68417.m03690 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; Common family member At5g52430
[Arabidopsis thaliana];
Length = 449
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 95 CV*SILQCSLQYSRCSGNMVPRNCCRTKPEEVPLVSSKLPS 217
C+ S L S + + SG + NCC+T E S KL S
Sbjct: 354 CLASKLNRSGSHEKASGEHLRPNCCKTSGETESEQSQKLRS 394
>At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 541
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/48 (22%), Positives = 20/48 (41%)
Frame = +3
Query: 276 AQFKRXRAVDSXILSILRQRYEXCMMYEQPDHATKCRSLWDKYKSAEE 419
A K +D + + + YE +Y + +WDKYK+ +
Sbjct: 240 ADRKEITRLDGLTMLAMAKAYELMSLYGEAGEIEDVHRVWDKYKATRQ 287
>At2g22250.2 68415.m02642 aminotransferase class I and II family
protein similar to aspartate aminotransferase from
Bacillus stearothermophilus SP|Q59228, Thermus aquaticus
SP|O33822; contains Pfam profile PF00155
aminotransferase, classes I and II
Length = 475
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 122 LQYSRC-SGNMVPRNCCRTKPEEVPLVSSKL 211
L +S C SGNM R C KP + +SS +
Sbjct: 38 LSFSYCKSGNMSSRICAMAKPNDAETLSSSV 68
>At1g54350.1 68414.m06196 ABC transporter family protein similar to
hypothetical ABC transporter ATP-binding protein
GI:9955395 from [Microcystis aeruginosa]
Length = 706
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 360 QPDHATKCRSLWDK-YKSAEEAWF 428
+PD A++ ++LW K YK A WF
Sbjct: 54 RPDKASELKTLWKKFYKVASPYWF 77
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,203,284
Number of Sequences: 28952
Number of extensions: 208615
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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