Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M09
         (575 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.031
SB_17945| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_37781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 35.5 bits (78), Expect = 0.031
 Identities = 17/41 (41%), Positives = 29/41 (70%)
 Frame = +1

Query: 121 IFLRKAPTVKEIQRQNDRDLRKAGRDLXRDKANLXREEKKL 243
           +F RK  T +E+ +QN R L +A RDL R+++ + ++EKK+
Sbjct: 6   LFGRKK-TPEEMLKQNQRALNRAMRDLDRERSKMEQQEKKI 45


>SB_17945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 151 EIQRQNDRDLRKAGRDLXRDKANLXREEKKL 243
           E  RQ  R L +  R+L RDK  L R+EK+L
Sbjct: 49  EQMRQQKRQLNRTQRELARDKNALERQEKQL 79


>SB_48777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 160 RQNDRDLRKAGRDLXRDKANLXREEKKLXS 249
           RQ  R L +  R+L RDK  L R+EK+L +
Sbjct: 2   RQQKRQLNRTQRELARDKNALERQEKQLAA 31


>SB_47110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 124 FLRKAPTVKEIQR---QNDRDL-----RKAGRDLXRDKANLXREEKKLXSK 252
           + +K  T KEI+R   +N R L     RKA R L ++ ANL R EKK   K
Sbjct: 80  YYKKKLTFKEIRRLFRKNVRSLSEKRRRKATRRLKKEIANLKRLEKKSRKK 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,240,762
Number of Sequences: 59808
Number of extensions: 203939
Number of successful extensions: 301
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)