Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_M09
         (575 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domai...    31   0.42 
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si...    29   1.7  
At3g47750.1 68416.m05202 ABC transporter family protein probable...    27   9.0  

>At2g06530.1 68415.m00724 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 225

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +1

Query: 133 KAPTVKEIQRQNDRDLRKAGRDLXRDKANLXREEKKLXSK 252
           K  T  E+ R+N R L K+ R++ R++  L  +EKKL ++
Sbjct: 8   KRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINE 47


>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative
           similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
           helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
           contains Pfam profiles PF04408: Helicase associated
           domain (HA2), PF00271: Helicase conserved C-terminal
           domain, PF00575: S1 RNA binding domain
          Length = 1168

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 148 KEIQRQNDRDLRKAGRDLXRDKANLXREEKK 240
           +E  R  DRD R++GRD  RD+ N  R++++
Sbjct: 123 REEDRNRDRDRRESGRDRDRDR-NRDRDDRR 152


>At3g47750.1 68416.m05202 ABC transporter family protein probable
           transport protein ABC-C, Homo sapiens, PIR2:S71363
          Length = 944

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 475 HLHFVTILTLYSKCLLLF**CGDEVSTFSQLFL 377
           + +F+ I TLY  CL++F   G  +   S+LFL
Sbjct: 388 YAYFLAISTLYIICLMIF---GSAIEQVSELFL 417


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,216,160
Number of Sequences: 28952
Number of extensions: 142331
Number of successful extensions: 275
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)