Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M04
(526 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39990.1 68415.m04914 eukaryotic translation initiation facto... 110 6e-25
At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory su... 74 7e-14
At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory su... 73 9e-14
At1g10840.1 68414.m01246 eukaryotic translation initiation facto... 48 3e-06
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 34 0.051
At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subuni... 32 0.21
At5g53900.2 68418.m06706 expressed protein similar to unknown pr... 31 0.36
At5g53900.1 68418.m06705 expressed protein similar to unknown pr... 31 0.36
At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3) ... 31 0.63
At5g20020.1 68418.m02382 Ras-related GTP-binding nuclear protein... 31 0.63
At5g20010.1 68418.m02381 Ras-related GTP-binding nuclear protein... 31 0.63
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 30 0.83
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 30 0.83
At5g48460.1 68418.m05992 fimbrin-like protein, putative strong s... 29 1.9
At5g22940.1 68418.m02682 exostosin family protein contains Pfam ... 28 3.3
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 3.3
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 28 3.3
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 28 3.3
At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containi... 27 5.8
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra... 27 7.7
>At2g39990.1 68415.m04914 eukaryotic translation initiation factor 3
subunit 5 / eIF-3 epsilon / eIF3f (TIF3F1) identical to
SP|O04202 Eukaryotic translation initiation factor 3
subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 293
Score = 110 bits (264), Expect = 6e-25
Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Frame = +3
Query: 90 FQIVDAYERRNADSHRVIGTLLGTS-DKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYX 266
F + D + RR + RVIGTLLG+ G V++ N + VPH E +DQV +++Y ++
Sbjct: 36 FNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLA 95
Query: 267 LNRRVNSSESIVGWWATGNEVTNHSSVIHXYYSRECREPVHVTLDTSLAGGRMGLRAYVC 446
+ +VNS E+IVGW++TG V SS+IH +Y+RE P+H+T+DT G ++A+V
Sbjct: 96 SHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVS 155
Query: 447 VPLGVPNGKQGCMFTPVXVTL 509
L + + + F + V L
Sbjct: 156 SNLSLGDRQLVAHFQEIPVDL 176
>At5g05780.1 68418.m00636 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26s proteasome regulatory subunit s12
(proteasome subunit p40) (mov34 protein) SP:P26516 from
[Mus musculus]; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 308
Score = 73.7 bits (173), Expect = 7e-14
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Frame = +3
Query: 96 IVDAYERRNADSH-RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVY 263
IVD Y R DS RV+G LLG+S +GVV+VTN + VP +E + NY ++
Sbjct: 27 IVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMF 86
Query: 264 XLNRRVNSSESIVGWWATGNEVTNHSSVIHXYYSRECREPVHVTLDTSLAGGRMGLRAYV 443
+ +R+N+ E +VGW++TG ++ + +H ++ PV V +D + +AY
Sbjct: 87 HMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 444 CV 449
V
Sbjct: 147 AV 148
>At3g11270.1 68416.m01370 26S proteasome non-ATPase regulatory
subunit 7, putative / 26S proteasome regulatory subunit
S12, putative / MOV34 protein, putative contains
similarity to 26S proteasome regulatory subunit S12
(MOV34) SP:P26516 from [Mus musculus]
Length = 310
Score = 73.3 bits (172), Expect = 9e-14
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Frame = +3
Query: 96 IVDAYERRNAD-SHRVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEA---ELNYAMDVY 263
IVD Y R D S RV+G LLG+S +G V+VTN + VP +E + NY ++
Sbjct: 27 IVDHYNRVAKDTSKRVVGVLLGSSSRGTVDVTNSYAVPFEEDDKDTSIWFLDHNYHESMF 86
Query: 264 XLNRRVNSSESIVGWWATGNEVTNHSSVIHXYYSRECREPVHVTLDTSLAGGRMGLRAYV 443
+ +R+N+ E IVGW++TG ++ + +H ++ PV V +D + +AY
Sbjct: 87 HMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYY 146
Query: 444 CV 449
V
Sbjct: 147 AV 148
>At1g10840.1 68414.m01246 eukaryotic translation initiation factor 3
subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) identical to
SP|Q9C5Z2 Eukaryotic translation initiation factor 3
subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h)
{Arabidopsis thaliana}; contains Pfam profile PF01398:
Mov34/MPN/PAD-1 family
Length = 337
Score = 48.4 bits (110), Expect = 3e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +3
Query: 138 VIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYXLNRRVNSSESIVGWW 311
V G LLG V+EVTNCF P ++ +++EA+ NY +++ R VN + VGW+
Sbjct: 47 VTGQLLGLDVGSVLEVTNCFPFPVRDDDEEIEADGANYQLEMMRCLREVNVDNNTVGWY 105
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 34.3 bits (75), Expect = 0.051
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 135 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYXLNRRVNSSESIVGWW 311
RV G ++G VE+ N F + D ++ L ++Y ++V ++GW+
Sbjct: 57 RVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELY---KKVFPDFYVLGWY 113
Query: 312 ATGNEVTNHSSVIHXYYSRECREPVHVTLDTSL 410
+TG++ T IH PV+V L+ ++
Sbjct: 114 STGSDATESDMHIHKALMDINESPVYVLLNPAI 146
>At5g56280.1 68418.m07024 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6A) identical to CSN complex subunit 6A [Arabidopsis
thaliana] GI:18056665, COP9 complex subunit 6
[Arabidopsis thaliana] GI:15809663; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; identical to
cDNA CSN complex subunit 6A (CSN6A) GI:18056664
Length = 317
Score = 32.3 bits (70), Expect = 0.21
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +3
Query: 135 RVIGTLLGTSDKGVVEVTNCFCVPHKEHADQVEAE-LNYAMDVYXLNRRVNSSESIVGWW 311
RV G ++G VE+ N F + + ++ L ++Y ++V I+GW+
Sbjct: 57 RVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELY---KKVFPDFYILGWY 113
Query: 312 ATGNEVTNHSSVIHXYYSRECREPVHVTLDTSL 410
+TG++ IH PV+V L+ ++
Sbjct: 114 STGSDAEESDMHIHKALMDINESPVYVLLNPAI 146
>At5g53900.2 68418.m06706 expressed protein similar to unknown
protein (gb|AAF34833.1)
Length = 377
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 147 CR*LCENLHFDVRMRPQFEIKQAGWTFTLILRAIFNSTXNYKPKKHRVP 1
C+ + E+LHF +RMR FE G+ L +F+S P VP
Sbjct: 177 CKIIPEDLHFVLRMRQMFE--SIGYRSGFYLSQLFSSNRTATPSSSTVP 223
>At5g53900.1 68418.m06705 expressed protein similar to unknown
protein (gb|AAF34833.1)
Length = 265
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 147 CR*LCENLHFDVRMRPQFEIKQAGWTFTLILRAIFNSTXNYKPKKHRVP 1
C+ + E+LHF +RMR FE G+ L +F+S P VP
Sbjct: 65 CKIIPEDLHFVLRMRQMFE--SIGYRSGFYLSQLFSSNRTATPSSSTVP 111
>At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3)
identical to atran3 [Arabidopsis thaliana] GI:2058280
Length = 221
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 38 ELKMALNISVKVHPACFISNCGRIR 112
E K I V+VHP F +NCG+IR
Sbjct: 39 EKKYEPTIGVEVHPLDFFTNCGKIR 63
>At5g20020.1 68418.m02382 Ras-related GTP-binding nuclear protein
(RAN-2) identical to GTP-binding nuclear protein RAN-2
SP:P41917 from [Arabidopsis thaliana]
Length = 221
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 38 ELKMALNISVKVHPACFISNCGRIR 112
E K I V+VHP F +NCG+IR
Sbjct: 39 EKKYEPTIGVEVHPLDFFTNCGKIR 63
>At5g20010.1 68418.m02381 Ras-related GTP-binding nuclear protein
(RAN-1) identical to GTP-binding nuclear protein RAN-1
SP:P41916 from [Arabidopsis thaliana]
Length = 221
Score = 30.7 bits (66), Expect = 0.63
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 38 ELKMALNISVKVHPACFISNCGRIR 112
E K I V+VHP F +NCG+IR
Sbjct: 39 EKKYEPTIGVEVHPLDFFTNCGKIR 63
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 281 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 177
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 238 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 271
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 30.3 bits (65), Expect = 0.83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 281 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVGYFH 177
D++V L+ IH+ I F F ++FVW +A+G H
Sbjct: 318 DTAVILMLIHQFITFGFACTPLYFVWE-KAIGMHH 351
>At5g48460.1 68418.m05992 fimbrin-like protein, putative strong
similarity to fimbrin-like protein AtFim2 [Arabidopsis
thaliana] GI:2737926; contains Pfam profile PF00307:
Calponin homology (CH) domain
Length = 654
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = -3
Query: 341 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 237
G+V + ++S+PP F+ +++ Q+V + + +KF
Sbjct: 436 GIVNWKVSSKPPIKLPFKKVENCNQVVKLGKQLKF 470
>At5g22940.1 68418.m02682 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 469
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 404 FAGWRSNGFTCI-CLCTIGSAKWKARL 481
FAG+RS + CLC +G A W RL
Sbjct: 332 FAGYRSEIVRSVFCLCPLGWAPWSPRL 358
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 349 YTXIIPVNAVSLSMLL 396
YT ++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 349 YTXIIPVNAVSLSMLL 396
YT ++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 349 YTXIIPVNAVSLSMLL 396
YT ++PVNAVSLS LL
Sbjct: 231 YTTVVPVNAVSLSPLL 246
>At5g67570.1 68418.m08520 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 611
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 340 PLLYTXIIPVNAVSLSMLLWTLRWLEVEWVYVHM 441
P+L ++ NA+ L+ + TL+W V WV+V +
Sbjct: 335 PVLEPDLVVYNAI-LNACVPTLQWKAVSWVFVEL 367
>At2g28110.1 68415.m03415 exostosin family protein contains 1
transmembrane domain; similar to
pectin-glucuronyltransferase (GI:23821292) [Nicotiana
plumbaginifolia]; similar to NpGUT1 homolog
(GI:23821294) [Arabidopsis thaliana]; contains Pfam
profile PF03016: Exostosin family
Length = 448
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 404 FAGWRSN-GFTCICLCTIGSAKWKARL 481
FAG++S + CLC +G A W RL
Sbjct: 318 FAGYQSEIARSVFCLCPLGWAPWSPRL 344
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,608
Number of Sequences: 28952
Number of extensions: 261987
Number of successful extensions: 669
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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