Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_M01
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 46 2e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 45 4e-05
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 7e-05
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 7e-05
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 44 7e-05
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 44 7e-05
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 44 9e-05
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 42 2e-04
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 42 4e-04
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 42 4e-04
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 42 4e-04
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 41 5e-04
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 41 5e-04
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 41 6e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 40 8e-04
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 40 0.001
At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) famil... 39 0.003
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 38 0.003
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 38 0.003
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 38 0.005
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.005
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.005
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 38 0.005
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 38 0.005
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.008
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.008
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.008
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 37 0.008
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 37 0.010
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 37 0.010
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 36 0.014
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 36 0.014
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 36 0.014
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 36 0.024
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 36 0.024
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 36 0.024
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.024
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.024
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.032
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 35 0.032
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 35 0.032
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 35 0.032
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 35 0.042
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 35 0.042
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 35 0.042
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 34 0.055
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 34 0.073
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 34 0.073
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.073
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 34 0.073
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.073
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.073
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.097
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 33 0.097
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.13
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 33 0.13
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 33 0.13
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 33 0.13
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.17
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.17
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 33 0.17
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.22
At1g43680.1 68414.m05018 hypothetical protein 32 0.22
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 32 0.30
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 32 0.30
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 32 0.30
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 32 0.30
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 32 0.30
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 32 0.30
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 32 0.30
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 31 0.39
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 31 0.39
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 31 0.39
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 31 0.39
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 31 0.39
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.52
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 31 0.52
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 31 0.68
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 0.90
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ... 30 0.90
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 30 0.90
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 30 1.2
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 30 1.2
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 30 1.2
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 30 1.2
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 30 1.2
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 30 1.2
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 29 1.6
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 29 1.6
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 29 1.6
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 29 1.6
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 1.6
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 29 1.6
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 2.1
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.1
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.1
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 29 2.1
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 29 2.1
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 2.1
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 29 2.1
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.1
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.1
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 29 2.8
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 29 2.8
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 29 2.8
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 29 2.8
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 29 2.8
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 28 3.6
At5g22930.1 68418.m02681 hypothetical protein 28 3.6
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 3.6
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 28 3.6
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 28 3.6
At2g40475.1 68415.m04995 expressed protein 28 3.6
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 28 3.6
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 27 6.4
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 27 6.4
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 27 6.4
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 27 8.4
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 27 8.4
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 27 8.4
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 8.4
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 27 8.4
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFNGG 310
V+VG+ ++ DL +LF +FG V D+ + FV+ + E A AIR N+TF G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 119 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 295
P +FV + P ++ D+ + FE +G V + FV T+E A A+ + HNS
Sbjct: 93 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 152
Query: 296 TFNGGVISVE 325
V+SVE
Sbjct: 153 KLLDKVVSVE 162
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 44.8 bits (101), Expect = 4e-05
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 283
T V+V +L + E+L K+F FGV T C IM GFV+ + + AA A+ A
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 284 LHNSTFN 304
L+ TF+
Sbjct: 284 LNGKTFD 290
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 283
+ ++V +L + + LR+ F FG +T C +M GFV T E+A AI
Sbjct: 327 SNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITE 386
Query: 284 LH 289
++
Sbjct: 387 MN 388
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 44.0 bits (99), Expect = 7e-05
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVGS+P+ + E++R FE+ G V E ++ C FV T + A AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 284 LHNS-TFNGGVISVE 325
LHN T GG V+
Sbjct: 181 LHNQITLPGGTGPVQ 195
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 286
K+FVGSL + + +++ ++F +FG V + +M CGFV ++E A AAI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 287 HNSTF 301
N T+
Sbjct: 272 -NGTY 275
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 44.0 bits (99), Expect = 7e-05
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVGS+P+ + E++R FE+ G V E ++ C FV T + A AIRA
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 284 LHNS-TFNGGVISVE 325
LHN T GG V+
Sbjct: 181 LHNQITLPGGTGPVQ 195
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 286
K+FVGSL + + +++ ++F +FG V + +M CGFV ++E A AAI L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271
Query: 287 HNSTF 301
N T+
Sbjct: 272 -NGTY 275
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 44.0 bits (99), Expect = 7e-05
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI------MNR-CGFVHMQTEEQAAAA 274
+ +T++ ++P S PED+R LFE++G V + ++ NR F+ M + E+AA A
Sbjct: 91 ISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATA 150
Query: 275 IRALHNSTFNGGVISVE 325
+++L + + G + V+
Sbjct: 151 LKSLESCEYEGRRLKVD 167
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 301
VFVG+ ++ DL +LF+++G V D+ + FV+ + E A AIR L N F
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPF 60
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 119 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 295
P +FV + P +K D+ K FE +G VT I FV +T+E A A+ A S
Sbjct: 91 PTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRS 150
Query: 296 TFNGGVISVE 325
V+SVE
Sbjct: 151 KILDRVVSVE 160
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 43.6 bits (98), Expect = 9e-05
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRA 283
++FVGSL +G+ EDL+K+F G VTE I+ F+ T EQA A++
Sbjct: 215 EIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Query: 284 LHNSTFNG 307
L + NG
Sbjct: 275 LKSPMING 282
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NRC-GFVHMQTEEQAAAAIRA 283
T V+V +LP+ ++LRK F +FGV++ +M +RC GFV+ + E AA+A+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 284 LHNSTFNGGVISV 322
++ + V+ V
Sbjct: 289 MNGISLGDDVLYV 301
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTEC----DIMNRC---GFVHMQTEEQAAAAIRALH 289
+F+ +L + L + F FG + C D+ R GFV + EE A AAI L+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 290 NSTFN 304
N
Sbjct: 198 GMLMN 202
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRAL 286
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRAL 286
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRAL 55
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTF 301
VF G+ ++ DL +LF ++G V D+ FV+M+ E A AIRAL F
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEF 60
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 41.5 bits (93), Expect = 4e-04
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECD-----IMNR---CGFVHMQTEEQAAAA 274
P+TK++V L + + LR FE+FG + + + NR F+ +TEE+A A
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKA 134
Query: 275 IRALHNSTFNGGVISVE 325
I+ +H +G VI VE
Sbjct: 135 IQGMHGKFLDGRVIFVE 151
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 304
T+++VG L ++ DL +LF R+G V + D+ FV A A L F+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 305 GGVISVE 325
G I+VE
Sbjct: 71 GSRITVE 77
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNSTFN 304
T+++VG L ++ DL +LF R+G V + D+ FV A A L F+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 305 GGVISVE 325
G I+VE
Sbjct: 71 GSRITVE 77
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 40.7 bits (91), Expect = 6e-04
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 280
TK+++G L G+ L+ F F VTE +M GFV+ +E+ A +AI
Sbjct: 31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAIS 90
Query: 281 ALHNSTFNGGVISV 322
A++ NG ISV
Sbjct: 91 AMNGQELNGFNISV 104
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 40.3 bits (90), Expect = 8e-04
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Frame = +2
Query: 98 YKSVIMVPQ--TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHM 247
Y ++ +P ++VF+G LP+ EDLR L E G + E +M FV
Sbjct: 105 YSHLLSLPPHGSEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAF 164
Query: 248 QTEEQAAAAIRALHNSTFNGGVI 316
+T++ A AI LH+ F G I
Sbjct: 165 KTKDVAQKAIEELHSKEFKGKTI 187
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAI 277
P+ K+FVG LP+ +++ LF +G + + I+ C F+ +++EQA AA+
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAM 166
Query: 278 RALH 289
AL+
Sbjct: 167 EALN 170
>At1g69250.1 68414.m07936 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 427
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Frame = +2
Query: 101 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---------C-GFVHMQ 250
+ VI VP T +FV +LP + P L +LF+ FG + E I R C GF+ +
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVRSSRGNANPVCFGFISFE 331
Query: 251 TEEQAAAAIRALHNSTF 301
T + ++A N+ F
Sbjct: 332 TVASVQSVLQAAKNTPF 348
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 298
T +FVG++ Q +DL+ +F +FG + I RCGFV A A+ L+ +
Sbjct: 278 TTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQ 337
Query: 299 FNG 307
G
Sbjct: 338 LGG 340
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 119 PQTKVFVGSL-PQGSKPEDLRKLFERFGVVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 295
P +FV + P ++ D+ + FE +G V + FV T+E A A+ + HNS
Sbjct: 67 PTKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNS 126
Query: 296 TFNGGVISVE 325
V+SVE
Sbjct: 127 KLLDKVVSVE 136
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 280
+++FVG L DL + F RFG + +C IM GF+ +IR
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 281 ALHNSTFNGGVISV 322
+H F VISV
Sbjct: 67 EMHGRDFGDRVISV 80
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 286
K+FVG LP+ +++ LF ++G + + I+ C F+ +T+EQA +A+ ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 287 H 289
+
Sbjct: 167 N 167
Score = 33.5 bits (73), Expect = 0.097
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ L LF+ F VV E +I+ C F+ + E+A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 284 LHN 292
HN
Sbjct: 79 CHN 81
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.005
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 286
K+FVG LP+ +++ LF ++G + + I+ C F+ +T+EQA +A+ ++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 287 H 289
+
Sbjct: 167 N 167
Score = 33.5 bits (73), Expect = 0.097
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
K+FVG +P+ L LF+ F VV E +I+ C F+ + E+A + A
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 284 LHN 292
HN
Sbjct: 79 CHN 81
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 277
++++FVG L L F+R+G +TEC IM GF+ A AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 278 RALHNSTFNGGVISV 322
+ +H VISV
Sbjct: 71 KHMHGRELGNKVISV 85
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 277
++++FVG L L F+R+G +TEC IM GF+ A AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 278 RALHNSTFNGGVISV 322
+ +H VISV
Sbjct: 71 KHMHGRELGNKVISV 85
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 280
+K+FVG L G+ L++ F FG VTE ++ GFV E+ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 281 ALHNSTFNGGVISV 322
+ NG I V
Sbjct: 95 EMDGKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 280
+K+FVG L G+ L++ F FG VTE ++ GFV E+ A AI+
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 281 ALHNSTFNGGVISV 322
+ NG I V
Sbjct: 95 EMDGKELNGRQIRV 108
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.1 bits (82), Expect = 0.008
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 298
T VFVG L + L+ +F ++G + I RCGFV + A A+R L+
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQ 320
Query: 299 FNGGVI 316
G +
Sbjct: 321 LGGTTV 326
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRAL 286
K+FVG LP+ +++ LF +G + + I+ C F+ +++EQA AA+ AL
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 287 H 289
+
Sbjct: 161 N 161
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 36.7 bits (81), Expect = 0.010
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NR-------CGFVHMQTEEQAAAAI 277
+ K+FVG+LP + L LFE+ G V +++ NR GFV M T E+A A+
Sbjct: 112 EAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 278 RALHNSTFNGGVISV 322
++ NG ++V
Sbjct: 172 EKFNSFEVNGRRLTV 186
Score = 32.3 bits (70), Expect = 0.22
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
+++VG+LP L +LF G V + +++ GFV M E + AI A
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 284 LHNSTFNGGVISV 322
L G I V
Sbjct: 268 LDGQNLEGRAIKV 280
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 36.7 bits (81), Expect = 0.010
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN-----RCGFVHMQTEEQAAAAIRALH 289
TK+FVG+L + +DLR+ FE+FG V + ++++ R T + +RAL
Sbjct: 12 TKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQ 71
Query: 290 NS 295
NS
Sbjct: 72 NS 73
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 36.3 bits (80), Expect = 0.014
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNST 298
T +FVG L ++L+ +F +FG + I RCGFV + A A+ L+ +
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQ 319
Query: 299 FNG 307
G
Sbjct: 320 LGG 322
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 36.3 bits (80), Expect = 0.014
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRCG--FVHMQTEEQAAAAIRALHNSTFN 304
++VGSL + DL +LF R+G + + + G F++ + E+A AA AL + N
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 305 G 307
G
Sbjct: 80 G 80
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 36.3 bits (80), Expect = 0.014
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 101 KSVIMVPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 229
+ VI VP T +FV +LP + P L +LF+ FG + E I R
Sbjct: 272 QKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQVR 314
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 284 LHNSTFNGGVISV 322
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 284 LHNSTFNGGVISV 322
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 35.5 bits (78), Expect = 0.024
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 284 LHNSTFNGGVISV 322
++ +G VI+V
Sbjct: 67 MNGKELDGRVITV 79
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 280
TK+F+G L G+ LR F FG V + ++ GFV+ E A AAI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 281 ALHNSTFNGGVISV 322
+ NG I V
Sbjct: 95 EMDGKELNGRHIRV 108
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.024
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIR 280
TK+F+G L G+ LR F FG V + ++ GFV+ E A AAI
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 281 ALHNSTFNGGVISV 322
+ NG I V
Sbjct: 95 EMDGKELNGRHIRV 108
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 35.1 bits (77), Expect = 0.032
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNR-CGFVHMQTEEQAAAAI 277
+ V V +L + ++ DL +LF FG VT C + M+R GFV + E A AI
Sbjct: 173 ENSVRVTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAI 232
Query: 278 RALHNSTFNGGVISVE 325
L+ ++ ++ VE
Sbjct: 233 NKLNGYGYDNLILRVE 248
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 35.1 bits (77), Expect = 0.032
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHN 292
P ++VG+LP G +L F RFG + FV+ +E A AAI +L
Sbjct: 21 PSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESLQG 80
Query: 293 STFNGGVISVE 325
+G + +E
Sbjct: 81 FPLSGNPLRIE 91
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 35.1 bits (77), Expect = 0.032
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 304
+FVG + EDLR+ F +FG V I CGFV + A AI +L+ +
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 305 GGVI 316
+
Sbjct: 383 KNTV 386
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 35.1 bits (77), Expect = 0.032
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFG--VVTECDIMNRCGFVHMQTEEQAAAAIRALH 289
+ T +FVG L EDL++ F FG V + + CGFV A A+ L+
Sbjct: 301 IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 290 NS 295
+
Sbjct: 361 GT 362
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 34.7 bits (76), Expect = 0.042
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +2
Query: 137 VGSLPQGSKPEDLRKLFERFGVVTECDIMN--RCGFVHMQTEEQAAAAIRALHNSTFNGG 310
V +L E LR+LF G V +C I + ++ E+A AA+ AL+N+ G
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAAL-ALNNTEVFGR 413
Query: 311 VISVE 325
++VE
Sbjct: 414 ALNVE 418
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 34.7 bits (76), Expect = 0.042
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFG--VVTECDIMNRCGFVHMQTEEQAAAAIRALHNS 295
T +FVG L EDL++ F FG V + + CGFV A A+ L+ +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGT 364
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.7 bits (76), Expect = 0.042
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +2
Query: 101 KSVIMVP-QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN 226
K ++M Q KV+VG+LP ++P+ LR F +FG + +++
Sbjct: 203 KKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLH 245
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 34.3 bits (75), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRA 283
T V+V +L + + DL++LF FG +T +M R GFV+ + E A AI
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
Query: 284 LH 289
++
Sbjct: 179 MN 180
Score = 30.3 bits (65), Expect = 0.90
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAI 277
++V +L L +LF FG +T C +M GFV T E+A+ A+
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAM 280
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 33.9 bits (74), Expect = 0.073
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P T +FV L + + E LR F +FG V + ++ GFV T E +A
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKG 113
Query: 275 IRALHNSTFNGGVISVE 325
I + +G VI E
Sbjct: 114 IAGMDGKFLDGWVIFAE 130
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIRAL 286
+ + +LP ++P DLR FERFG + + + GFV + E AA A++ +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 287 HNSTFNGGVISV 322
++ G I++
Sbjct: 109 NHKVIGGREIAI 120
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.073
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDI 220
K+FVG LPQ + +DLR F RFG + + I
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYI 271
Score = 30.7 bits (66), Expect = 0.68
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTE 211
T++FV +P D R FER+G +T+
Sbjct: 91 TRIFVARIPSSVSESDFRSHFERYGEITD 119
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 33.9 bits (74), Expect = 0.073
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
KV+VG+L + E L LF G V + GFV +EE AAI A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 284 LHNSTFNGGVISV 322
L+NS G I V
Sbjct: 238 LNNSLLEGQKIRV 250
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALH 289
TK+FVG L ++ + +R+ FE+FG + E ++ R T ++A AA+RA
Sbjct: 22 TKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQ 81
Query: 290 N 292
N
Sbjct: 82 N 82
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 33.9 bits (74), Expect = 0.073
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTE----CDIMNRC---GFVHMQTEEQAAAAIRA 283
+ ++V ++ E+LRK F + G +T CD + GFV T E+A A++
Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKT 363
Query: 284 LHNSTFNG 307
H F+G
Sbjct: 364 FHGQMFHG 371
Score = 33.5 bits (73), Expect = 0.097
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDI-------MNRCGFVHMQTEEQAAAAIRALH 289
VFV +LP+ L+ +F++FG + C + GFV + E+ A AAI+ L
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL- 172
Query: 290 NST 298
NST
Sbjct: 173 NST 175
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.5 bits (73), Expect = 0.097
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM-NR-------CGFVHMQTEEQAAAAI 277
+ K+FVG+L + L LFE+ G V +++ NR GFV M + ++A A+
Sbjct: 149 EAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 278 RALHNSTFNGGVISV 322
+ NG +++V
Sbjct: 209 EKFNRYDLNGRLLTV 223
Score = 29.9 bits (64), Expect = 1.2
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P +V+VG+LP L +LF G V E ++ GFV M ++ A
Sbjct: 242 PAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEA 301
Query: 275 IRALHNSTFNGGVISV 322
I AL G I V
Sbjct: 302 ISALDGQNLEGRAIRV 317
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 33.5 bits (73), Expect = 0.097
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM------NR-CGFVHMQTEEQAAAAIRAL 286
K+FV +LP D+ +LF + G V +I+ NR FV M + E+A AAI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 287 HNSTFNGGVISV 322
+G +ISV
Sbjct: 156 DTFQVSGRIISV 167
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN--------RCGFVHMQTEEQAAAAIRA 283
+ FVG L + EDL++ F +FG V + I+N GFV + E+ AI
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 284 LHNSTFNGG 310
++ S GG
Sbjct: 67 MNGSGGGGG 75
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 33.1 bits (72), Expect = 0.13
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 280
T+V+VG+L + + LR+ F +G V + +M GFV + +A AA+
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVS 62
Query: 281 ALHNSTFNGGVISVE 325
+ NG +SV+
Sbjct: 63 GMDGKELNGRRVSVK 77
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP D + FE+FG T+ +M
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVM 140
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 33.1 bits (72), Expect = 0.13
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP D + FE+FG T+ +M
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVM 140
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + +++R+ FE+FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 32.7 bits (71), Expect = 0.17
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + +++R+ FE+FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFEQFGEILEAVII 49
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIMN 226
K+FVG L + E+ + FERFG T+ +M+
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMH 153
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTE 211
K+FVG + + + E L++ F R+G V E
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLE 34
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.22
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM--NRCGFVHMQTEEQAAAAIRALHNSTFN 304
+FVG L EDL + F FG V I CGFV + A AI L+ +
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 305 GGVI 316
+
Sbjct: 389 KNTV 392
>At1g43680.1 68414.m05018 hypothetical protein
Length = 247
Score = 32.3 bits (70), Expect = 0.22
Identities = 18/36 (50%), Positives = 21/36 (58%)
Frame = -3
Query: 234 PHRFIISHSVTTPKRSNSFLRSSGLEPCGRLPTNTF 127
PHRF S + +TP S SFL +SG P R PT F
Sbjct: 174 PHRFSSSSNSSTPIASASFLAASGWRPTTR-PTYEF 208
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.9 bits (69), Expect = 0.30
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP E+ + F++FG + + +M
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVM 142
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVV--------TECDIMNRCGFVHMQTEEQAAAAIR 280
TK++VG LP ++ E L F+RFG + E D GFV + E A A +
Sbjct: 13 TKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACK 72
Query: 281 ALHNSTFNGGV 313
N T G +
Sbjct: 73 D-PNPTIEGRI 82
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 280
++V++G +P + DL+ G VTE IM FV ++++ AA AI
Sbjct: 92 SEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 281 ALHNSTFNG 307
L+N+ F G
Sbjct: 152 TLNNTDFRG 160
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 31.9 bits (69), Expect = 0.30
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRCG-------FVHMQTEEQAAA 271
V K+F+ L + + LR FE FG + E I M++ F+ TEE A
Sbjct: 279 VKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGT 338
Query: 272 AIRALHNSTFNGGVISVE 325
A++ ++ NG +I V+
Sbjct: 339 ALKEMNGKIINGWMIVVD 356
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 31.9 bits (69), Expect = 0.30
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAI 277
Q +FV L + E+L+ FE +G +TEC ++ GFV +T + A AA+
Sbjct: 162 QRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAAL 221
Query: 278 RALHNSTFN 304
+ +N
Sbjct: 222 KNPEKRMYN 230
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L ++ E LR+ FE++G + E ++
Sbjct: 24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVI 56
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 31.5 bits (68), Expect = 0.39
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + E ++K FE+FG + E ++
Sbjct: 13 TKVFVGGLAWETHKETMKKHFEQFGEILEAVVI 45
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.5 bits (68), Expect = 0.39
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + +++R+ F++FG + E I+
Sbjct: 17 TKVFVGGLAWETPTDEMRRYFDQFGEILEAVII 49
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.1 bits (67), Expect = 0.52
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------CGFVHMQTEEQAAAAIRALHN 292
++V +L L ++F FG + C ++ GFV TE+ A +A ALH
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 293 STFNG 307
S G
Sbjct: 174 SMVYG 178
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 31.1 bits (67), Expect = 0.52
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTEC----DIMNRC---GFVHMQTEEQAAAAIRALH 289
VF+ +L + L + F FG + C D++ R GFV + EE A AAI L+
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 290 NSTFN 304
N
Sbjct: 194 GMLLN 198
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 30.7 bits (66), Expect = 0.68
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNRC--------GFVHMQTEEQAAAA 274
P +FVG L + + LR++ ++G + ++ GFV +TE++ A
Sbjct: 62 PYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRA 121
Query: 275 IRALHNSTFNGGVISVE 325
H+S +G I V+
Sbjct: 122 YEDAHHSLIDGREIIVD 138
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
P +FV L ++ EDL +F RFG V D++
Sbjct: 241 PDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVI 275
>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
lipase [Arabidopsis thaliana] GI:1145627; contains
InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
family
Length = 391
Score = 30.3 bits (65), Expect = 0.90
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 282 RFTTRHLTAA---SYPWSAVASKNAGSVGAVAVDEVPCAVAWSG 404
RF RHL+A P++ S++ GSVG A + VAW G
Sbjct: 300 RFINRHLSACCGVGGPYNFNLSRSCGSVGVEACSDPSKYVAWDG 343
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 30.3 bits (65), Expect = 0.90
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L ++ E LR+ F+++G + E ++
Sbjct: 24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVI 56
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAIR 280
+ +FV L+K+F FG VT I+ G+V ++E A +A+
Sbjct: 77 SSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVE 136
Query: 281 ALHNSTFNGGVISVE 325
A++ F+G I V+
Sbjct: 137 AMNGKFFDGRFILVK 151
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDI--------MNRCGFVHMQTEEQAAAAIRAL 286
+ V ++P +PE+LR+ FERFG V + I FV A A R++
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108
Query: 287 HNSTFNGGVISV 322
+ +F G I+V
Sbjct: 109 NRRSFAGREITV 120
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P+ + F+G L + LR FE++G + E ++ GF+ ++ A
Sbjct: 5 PEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
Query: 275 IRALHNSTFNGGVISVE 325
I A++ +G I+V+
Sbjct: 65 IAAMNGMDLDGRTITVD 81
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-------NRCGFVHMQTEEQAAAAIRALH 289
++V +L E LR+LF FG +T C +M GFV +A+ + ++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 290 NSTFNG 307
G
Sbjct: 390 GKMVGG 395
Score = 27.1 bits (57), Expect = 8.4
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTEC----DIMNRC---GFVHMQTEEQAAAAIRALH 289
+FV +L + + L + F G + C D M + GFV TE+ A AI L+
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 290 NSTFNGGVISV 322
N I V
Sbjct: 196 GKVLNDKQIFV 206
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + LR FE+FG + E ++
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
TKVFVG L + LR FE+FG + E ++
Sbjct: 7 TKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVI 39
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
+TK++V LP ++ E L FERFG + ++
Sbjct: 8 ETKIYVAGLPWITRTEGLISYFERFGEIVYAKVV 41
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + +K F +FG++T+ +M
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 65
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + +K F +FG++T+ +M
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 138
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG L + +K F +FG++T+ +M
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVM 138
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG LP + + F++FG + + +M
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVM 154
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAAIRA 283
+++VG+LP +L ++F G V + I+ GFV M + E+A A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 284 LHNSTFNGGVISV 322
++S G + V
Sbjct: 177 FNSSQIGGRTVKV 189
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.1 bits (62), Expect = 2.1
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVV----TECDIMNRCGFVHMQTEEQAAA--AI 277
+P + VG++ + +L+ LFE+FG + T C NR GF+ + + AA A
Sbjct: 214 IPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTAC--KNR-GFIMVSYCDIRAAQNAA 270
Query: 278 RALHNSTFNGGVISV 322
RAL N G + +
Sbjct: 271 RALQNKLLRGTKLDI 285
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 277
+T +++G LP + + L LF FG + ++ GFV + A A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 278 RALHNSTFNGGVISV 322
+A++ F G ++V
Sbjct: 539 QAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR--------CGFVHMQTEEQAAAAI 277
+T +++G LP + + L LF FG + ++ GFV + A A+
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAV 538
Query: 278 RALHNSTFNGGVISV 322
+A++ F G ++V
Sbjct: 539 QAMNGYRFEGRTLAV 553
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
K+FVG +P ++ ++ F +FG + E IM
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIM 162
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 29.1 bits (62), Expect = 2.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDI-MNRC-------GFVHMQTEEQAAAAIR 280
+K+F+G L + + L + F + G V E I M+R GFV + ++A A+
Sbjct: 34 SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALM 93
Query: 281 ALHNSTFNGGVISVE 325
+ NG I V+
Sbjct: 94 EFNGQQLNGRTIFVD 108
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.1 bits (62), Expect = 2.1
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVVTEC----DIM--NRCG--FVHMQTEEQAAAAIRA 283
K++V + + + D+R++FE++G VTE D M R F+ + E+ AAI A
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 284 L-HNSTFNGGVISVE 325
L TF G ++ V+
Sbjct: 171 LTEQFTFPGEMLPVK 185
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAA 271
+ Q +FV + E+L+ FE +G + EC ++ GFV +T + A
Sbjct: 405 IAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGARE 464
Query: 272 AIRALHNSTFNGGVI 316
A++ +N V+
Sbjct: 465 ALKRPEKRMYNRIVV 479
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 295
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 296 TFNGGVISVE 325
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 295
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 296 TFNGGVISVE 325
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 295
V+VG+LP + ++ LF ++G V + D+ FV A AI
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 296 TFNGGVISVE 325
F+G + VE
Sbjct: 69 DFDGHRLRVE 78
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P K+FVG+L L +LFE G V +++ GFV M T + AA
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 275 IRALHNSTFNGGVISV 322
+ + F G + V
Sbjct: 157 AQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Frame = +2
Query: 119 PQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM--------NRCGFVHMQTEEQAAAA 274
P K+FVG+L L +LFE G V +++ GFV M T + AA
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 275 IRALHNSTFNGGVISV 322
+ + F G + V
Sbjct: 157 AQQFNGYEFEGRPLRV 172
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
V K+FV LP + E L +FE +G + EC ++
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIM 223
V K+FV LP + E L +FE +G + EC ++
Sbjct: 101 VTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVV 136
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVV 205
+++VG+L +DLRK+FE FG V
Sbjct: 286 RLYVGNLHINMSEDDLRKVFESFGSV 311
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR------C-GFVHMQTEEQAAAAIRA 283
++V +LP S P L ++F+ FG + I R C GFV +T +A+ A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQGFCFGFVEFETSSGKQSALEA 352
>At5g22930.1 68418.m02681 hypothetical protein
Length = 248
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 122 QTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-CG 235
QT + G LPQ P K FE V +C I+N CG
Sbjct: 186 QTLLLAGPLPQWRHPPPPLKSFEIPPVTVQCPIVNNGCG 224
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 295
++VG+LP + ++ LF ++G V + D+ FV + A AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 296 TFNGGVISVE 325
F+G + VE
Sbjct: 69 DFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIM-----NRCGFVHMQTEEQAAAAIRALHNS 295
++VG+LP + ++ LF ++G V + D+ FV + A AI
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 296 TFNGGVISVE 325
F+G + VE
Sbjct: 69 DFDGHHLRVE 78
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 116 VPQTKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 229
V K++VG +P S +++R F GV+ + D R
Sbjct: 158 VVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMR 195
>At2g40475.1 68415.m04995 expressed protein
Length = 193
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 225 TGAGSCICRQRNKRQQQFAR-FTTRHLTAASYPWSAVASKNAGS 353
+ +G+ + + R +Q +F + +RH++ S+ WS+ +S ++ S
Sbjct: 75 SSSGNKLSKARTIKQTRFVKTLLSRHVSRPSFSWSSASSSSSSS 118
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTE 211
T + V +L + EDLRK FE+FG V +
Sbjct: 36 TSLLVRNLRHDCRQEDLRKSFEQFGPVKD 64
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR-------C-GFVHMQTEEQAAAAIRA 283
++V +LP S P L ++F+ FG + I R C GFV +T +A+ A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSALEA 353
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.5 bits (58), Expect = 6.4
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 167 EDLRKLFERFGVVTECDI-MNRCGFVHM--QTEEQAAAAIRALHNSTFNGGVIS 319
+D+ ++G V + N GFV++ Q+ E AAAA RA+H F +IS
Sbjct: 459 DDVADECSKYGPVNHIYVDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMIS 512
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 131 VFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR 229
+FV +L + PE L + F+ FG +T+ I R
Sbjct: 279 IFVANLLMDATPEQLNETFKGFGAITKDGIQVR 311
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 128 KVFVGSLPQGSKPEDLRKLFERFGVV 205
K+FVG+LP K + + F +FG +
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPI 191
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 249 RQRNKRQQQFARFTTRHLTAASYPWSAVASKNAGSVGAVAVD 374
R+RN+ + + L A S+PW +V K+ + +A+D
Sbjct: 168 RRRNEERLLYTNSRGVSLDARSHPWDSVRFKHPSTFDTLAMD 209
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Frame = +2
Query: 182 LFERFGVVTECDIMNRCG----------FVHMQTEEQAAAAIRALHNSTFNG 307
LFE G E + +N C +V + E+QAAAA++AL ++G
Sbjct: 85 LFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSG 136
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---CGFVHMQTEEQAAAAIRAL 286
T+V+VG+L +L F+ FGV+ + R F+ E A AI AL
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = +2
Query: 125 TKVFVGSLPQGSKPEDLRKLFERFGVVTECDIMNR---CGFVHMQTEEQAAAAIRAL 286
T+V+VG+L +L F+ FGV+ + R F+ E A AI AL
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,972
Number of Sequences: 28952
Number of extensions: 193181
Number of successful extensions: 824
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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