Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)               28   7.6  

>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1375

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 11/54 (20%)
 Frame = +2

Query: 131 MSNVTNQNGTGLEQQLAGLDLQ------PQAPKSTG-----RYIPPHLRRQLQA 259
           MS+V + N   L+Q+ AGLDL       P A ++       RYIPPHLR + Q+
Sbjct: 712 MSHVAHGNNQSLDQRFAGLDLNSGVGQSPDAGRNPNQPTQQRYIPPHLRGKQQS 765


>SB_41827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 608 FPAVIPWCRWF-IILLTSHVARPASVPFAFTIIPFVGFIPTLWFAIXRSTVSTAVPC 441
           +P+ IP+  W   I+L  H+     +    T I   GF+ ++W AI    V +  PC
Sbjct: 599 YPSGIPFTFWEQYIMLRQHLMVAIIIVLGITFIVIAGFLWSVWTAII--IVHSLHPC 653


>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 198 PRLLRVLVATYPRICVGSCRQPLIKGKSLSAQAXTPVLVSHG 323
           P+ L +L  TYP +  G     L   K ++AQ   P+L + G
Sbjct: 45  PKALSILTKTYPELRHGLSSTILFPLKPMTAQPPQPILANPG 86


>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
          Length = 460

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 135 VMLPTKMEQV*SSSLLVWTCSPRLLRVLVATYPRICVGSCR 257
           VM+   + +V    +LV+TCS  L  V  AT P +  G CR
Sbjct: 343 VMMAEVISEV-MKKILVFTCSGDLGHVTSATSPEVEEGDCR 382


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,614,498
Number of Sequences: 59808
Number of extensions: 298533
Number of successful extensions: 772
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)