Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L24
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    30   1.5  
At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protei...    29   2.7  
At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protei...    29   2.7  

>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 134 SNVTNQNGTGLEQQLAGLDLQPQAPKSTGRYIPPHLRRQLQATSDQ 271
           S   N + +    +     L  + P+S+ +Y+ PHLR Q ++ S++
Sbjct: 232 SETVNYHDSPSSLEKVDTPLHERKPESSSKYVAPHLRSQAKSESEE 277


>At4g04320.2 68417.m00617 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 517

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 186 WTCSPRLLRVLVATYPRICVGSCRQPLIKGKSLSAQA 296
           W  SPRLL VL     R+C     Q   +GK+L + A
Sbjct: 417 WATSPRLLPVLEPILMRLCARYLLQEKKRGKALDSVA 453


>At4g04320.1 68417.m00616 malonyl-CoA decarboxylase family protein
           contains weak similarity to Malonyl-CoA decarboxylase,
           mitochondrial precursor (EC 4.1.1.9) (MCD)
           (Swiss-Prot:O95822) [Homo sapiens]; contains Pfam
           profile PF05292: Malonyl-CoA decarboxylase (MCD)
          Length = 518

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 186 WTCSPRLLRVLVATYPRICVGSCRQPLIKGKSLSAQA 296
           W  SPRLL VL     R+C     Q   +GK+L + A
Sbjct: 418 WATSPRLLPVLEPILMRLCARYLLQEKKRGKALDSVA 454


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,459,746
Number of Sequences: 28952
Number of extensions: 206736
Number of successful extensions: 543
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)