Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_L18
(387 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi... 120 4e-28
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi... 116 6e-27
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo... 115 1e-26
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai... 29 1.1
At5g16940.1 68418.m01985 expressed protein contains Pfam profile... 28 1.9
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 25 2.8
At5g18830.2 68418.m02238 squamosa promoter-binding protein-like ... 27 4.4
At5g18830.1 68418.m02237 squamosa promoter-binding protein-like ... 27 4.4
>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
to SP:Q43292 from [Arabidopsis thaliana]
Length = 95
Score = 120 bits (288), Expect = 4e-28
Identities = 55/94 (58%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
MTKGT SFGKRRNK+HTLC RCG S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPK-KAVXSS 307
MR+L+ V RRF+ GF+EG P+ K V SS
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRNKGVASS 94
>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
Length = 95
Score = 116 bits (279), Expect = 6e-27
Identities = 51/93 (54%), Positives = 64/93 (68%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNK+HTLC RCG S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEGKPTPPKKAVXSS 307
MR+L+ V RRF+ GF+EG P+ +S
Sbjct: 61 TGRMRYLRNVPRRFKTGFREGTEAKPRSKASAS 93
>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
identical to GB:Q43292
Length = 95
Score = 115 bits (276), Expect = 1e-26
Identities = 54/94 (57%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Frame = +2
Query: 29 MTKGTSSFGKRRNKTHTLCRRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 208
M KGT SFGKRRNK+HTLC RCG S+HIQKS+C+ C YPAA+ R+Y+WSVKA
Sbjct: 1 MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRTYNWSVKAIRRKTTG 60
Query: 209 XXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVXSS 307
MR+L+ V RRF+ F+EG + TP KA SS
Sbjct: 61 TGRMRYLRNVPRRFKTCFREGTQATPRNKAAASS 94
>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain
Length = 215
Score = 29.1 bits (62), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +2
Query: 77 TLCRRCGXSSYHIQK-SKCAQCGY 145
T C RCG +YH Q + C CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209
>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
PF04828: Protein of unknown function (DUF636)
Length = 135
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 41 TSSFGKRRNKTHTLCRRCGXSSYHIQKS 124
T +FG K HT C+ CG +S++I +S
Sbjct: 64 TYTFGTHTAK-HTFCKVCGITSFYIPRS 90
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 25.4 bits (53), Expect(2) = 2.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 90 DVVXRHITFKNQNAPNVDILQ 152
D+ RHI+FK + P+V I Q
Sbjct: 1047 DIELRHISFKYPSRPDVQIFQ 1067
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 138 VDILQQNYDPTTGQ 179
+ +LQ+ YDP +GQ
Sbjct: 1093 IALLQRFYDPDSGQ 1106
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 775
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 5 PDCQRVTTMTKGTSSFGKRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 142
PDC+ + KG +K H +C RC +S+ + K C QCG
Sbjct: 141 PDCEADISELKGY-------HKRHRVCLRCATASFVVLDGENKRYCQQCG 183
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7
(SPL7) identical to squamosa promoter binding
protein-like 7 [Arabidopsis thaliana] GI:5931635;
contains Pfam profile PF03110: SBP domain
Length = 801
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 5 PDCQRVTTMTKGTSSFGKRRNKTHTLCRRCGXSSYHI----QKSKCAQCG 142
PDC+ + KG +K H +C RC +S+ + K C QCG
Sbjct: 141 PDCEADISELKGY-------HKRHRVCLRCATASFVVLDGENKRYCQQCG 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,967,555
Number of Sequences: 28952
Number of extensions: 122811
Number of successful extensions: 251
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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