Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L13
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)               30   1.9  
SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)             30   1.9  
SB_38136| Best HMM Match : COesterase (HMM E-Value=0)                  29   2.5  
SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  

>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +2

Query: 14  ERKVRKDSNWDENELKRLKXYI*RSQYYVPHTSFTLQILISN*SKN 151
           ERK  KDSNW +NE  R++      +YY P +  + + L    +KN
Sbjct: 14  ERKKGKDSNWQQNESIRVQ------KYYTPASKLSEKELAEKRAKN 53


>SB_49134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 14  ERKVRKDSNWDENELKRLKXY 76
           ERK  KDSNW +NE  R++ Y
Sbjct: 755 ERKKGKDSNWQQNESIRVQKY 775


>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
          Length = 1182

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 14 ERKVRKDSNWDENELKRLKXY 76
          ERK  KDSNW +NE  R++ Y
Sbjct: 14 ERKKGKDSNWQQNESIRVQKY 34


>SB_20632| Best HMM Match : Cu_bind_like (HMM E-Value=0.51)
          Length = 388

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 14 ERKVRKDSNWDENELKRLKXY 76
          ERK  KDSNW +NE  R++ Y
Sbjct: 14 ERKKGKDSNWQQNESIRVQKY 34


>SB_38136| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 590

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = +3

Query: 255 LNSWKRLIEGVYLYDQNINPYEGDAFHESPIV 350
           +N W+ +++ ++L D  +N  + + FH  P +
Sbjct: 298 INKWRPIVDNIFLEDTPVNLRKANKFHPYPFI 329


>SB_11112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = +3

Query: 375 KHVPYSLPFIFSAMDLLTAYLLYKTSXGFVXIFLNCQXKYLSHVSXESKDMVMTXSQLKE 554
           +  PY  PFI     L    L   T    V  ++  +  Y+      S  + +  +  K 
Sbjct: 352 QQAPYQKPFILFGTSLFIPKLWLYTLGNMVTQYVCIRSVYILTSECTSLTVTLVVTLRKF 411

Query: 555 TSEYVLSVYLFNPYSILNCVGMTTTVLXNMLL 650
            S  V   Y  NP+++ + +G T  V    L+
Sbjct: 412 LSLLVSIFYFRNPFTVYHWIG-TALVFSGTLI 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,099
Number of Sequences: 59808
Number of extensions: 347689
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)