Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_L13
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63110.1 68414.m07130 cell division cycle protein-related con...    65   4e-11
At1g12730.1 68414.m01477 cell division cycle protein-related con...    61   6e-10
At1g63110.3 68414.m07131 cell division cycle protein-related con...    42   3e-04
At1g12730.2 68414.m01478 cell division cycle protein-related con...    35   0.041
At1g63110.2 68414.m07132 cell division cycle protein-related con...    34   0.096
At4g28590.1 68417.m04089 expressed protein                             29   3.6  

>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
 Frame = +3

Query: 225 LSNRVXIATPLNSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIFHYL----LKHVPYS 392
           LS+R  ++TPL S +RL EG +L   +++PY G  +H SP++L +   L    +K  P  
Sbjct: 36  LSSRPEVSTPLTSIRRLAEGYWLKQASMSPYAGSMYHGSPLLLSVLGPLTVQRIKGQPSH 95

Query: 393 L--PFIFSAMDLLTAYLLYKTSXGFVXIF-LNCQXKYLSHVSXESKDMVMTXSQLKETSE 563
           L    +F   D+L+A LL          + LN +   L      S+D V     +    +
Sbjct: 96  LLCSLVFVIADILSAMLLRAIGQKLQMAYGLNAR---LLGFLKSSRDKV-----ILPCGD 147

Query: 564 YVLSVYLFNPYSILNCVGMTTTVLXNM 644
               VYL+NP++I++CVG++T+ + N+
Sbjct: 148 IAALVYLWNPFTIVSCVGLSTSPIENL 174


>At1g12730.1 68414.m01477 cell division cycle protein-related
           contains 10 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 474

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
 Frame = +3

Query: 183 LXRYWLIHTDFWHTLSNRVXIATPLNSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIF 362
           + R +LI +     LS+R  ++TP  S +RL EG +L   +++PY G  +H SP++L I 
Sbjct: 28  IFRLFLIFSPANINLSSRPEVSTPHTSLRRLAEGYWLKQSSLSPYAGSMYHGSPLLLSIL 87

Query: 363 HYLL------KHVPYSLPFIFSAMDLLTAYLLYKTSXGFVXIFLNCQXKYLSHVSXESKD 524
             L       +   +    +F   DLL+A LL         I    Q  Y  ++      
Sbjct: 88  GPLTVQRIEGQSSHHLCSLVFVIADLLSALLLR-------AIGQKLQKSYRMNLRPLGVL 140

Query: 525 MVMTXSQLKETSEYVLSVYLFNPYSILNCVGMTTTVLXNM 644
                  +    +    VYL+NP++IL+CVG++T+ + N+
Sbjct: 141 RSSQDRGILPCGDIAALVYLWNPFTILSCVGLSTSPIENL 180


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
 Frame = +3

Query: 306 INPYEGDAFHESPIVLVIFHYL----LKHVPYSL--PFIFSAMDLLTAYLLYKTSXGFVX 467
           ++PY G  +H SP++L +   L    +K  P  L    +F   D+L+A LL         
Sbjct: 1   MSPYAGSMYHGSPLLLSVLGPLTVQRIKGQPSHLLCSLVFVIADILSAMLLRAIGQKLQM 60

Query: 468 IFLNCQXKYLSHVSXESKDMVMTXSQLKETSEYVLSVYLFNPYSILNCVGMTTTVLXNM 644
            +     + L  +   S+D V+         +    VYL+NP++I++CVG++T+ + N+
Sbjct: 61  AY-GLNARLLGFLK-SSRDKVILPC-----GDIAALVYLWNPFTIVSCVGLSTSPIENL 112


>At1g12730.2 68414.m01478 cell division cycle protein-related
           contains 10 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 390

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 12/23 (52%), Positives = 21/23 (91%)
 Frame = +3

Query: 576 VYLFNPYSILNCVGMTTTVLXNM 644
           VYL+NP++IL+CVG++T+ + N+
Sbjct: 74  VYLWNPFTILSCVGLSTSPIENL 96


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 11/23 (47%), Positives = 21/23 (91%)
 Frame = +3

Query: 576 VYLFNPYSILNCVGMTTTVLXNM 644
           VYL+NP++I++CVG++T+ + N+
Sbjct: 80  VYLWNPFTIVSCVGLSTSPIENL 102


>At4g28590.1 68417.m04089 expressed protein 
          Length = 331

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 219 HTLSNRVXIATPLNSWKRLIEGVYLYDQNINPYEGDAFHESPIVLVIF 362
           H + N V        W+  I+  ++ + N   +E  AFH SP+V+++F
Sbjct: 180 HPIKNVVGDDGSEIDWEGEIDDSWVKEINCLEWESFAFHPSPLVVLVF 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,260
Number of Sequences: 28952
Number of extensions: 237531
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)