Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_L07
(539 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 170 4e-43
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 168 2e-42
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 168 2e-42
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 165 1e-41
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 163 7e-41
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 123 9e-29
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 47 7e-06
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 36 0.013
At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1 ... 29 2.6
At5g26717.1 68418.m03160 hypothetical protein 28 3.5
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 170 bits (414), Expect = 4e-43
Identities = 80/140 (57%), Positives = 99/140 (70%)
Frame = +1
Query: 40 SRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXX 219
++K F S G + + L MP + L+EL GL RKPMAL+KKLR+
Sbjct: 14 AKKRTFKKFSFKGVDLD-ALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKL 72
Query: 220 XXXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKP 399
+V+THLRNM+I+PEM+GSI+G+YNGKTFNQ+EIKPEMIGHYL EFS+TYKP
Sbjct: 73 DAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKP 132
Query: 400 VKHGRPGIGATHSSRFIPLK 459
V+HG+PG GATHSSRFIPLK
Sbjct: 133 VRHGKPGHGATHSSRFIPLK 152
Score = 34.3 bits (75), Expect = 0.053
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 39 LKKKRIFRKFTYRGVDLDQLL 101
L KKR F+KF+++GVDLD LL
Sbjct: 13 LAKKRTFKKFSFKGVDLDALL 33
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 168 bits (408), Expect = 2e-42
Identities = 78/120 (65%), Positives = 90/120 (75%)
Frame = +1
Query: 100 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXXXXXXXXXXXIVKTHLRNMII 279
L M + L++L GL RKPMAL+KKLR+ V+THLRNMII
Sbjct: 33 LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMII 92
Query: 280 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 459
VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93 VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 45 KKRIFRKFTYRGVDLDQLL 101
KKR F+KF ++GVDLD LL
Sbjct: 15 KKRTFKKFAFKGVDLDALL 33
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 168 bits (408), Expect = 2e-42
Identities = 78/120 (65%), Positives = 90/120 (75%)
Frame = +1
Query: 100 LHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXXXXXXXXXXXIVKTHLRNMII 279
L M + L++L GL RKPMAL+KKLR+ V+THLRNMII
Sbjct: 33 LDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMII 92
Query: 280 VPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSRFIPLK 459
VPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPVKHGRPG+GATHSSRFIPLK
Sbjct: 93 VPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152
Score = 32.7 bits (71), Expect = 0.16
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 45 KKRIFRKFTYRGVDLDQLL 101
KKR F+KF ++GVDLD LL
Sbjct: 15 KKRTFKKFAFKGVDLDALL 33
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 165 bits (402), Expect = 1e-41
Identities = 80/139 (57%), Positives = 97/139 (69%)
Frame = +1
Query: 43 RKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXXX 222
+K F S G + + L M + L++L GL RKPMAL+KKLR+
Sbjct: 13 KKRTFKKFSFRGVDLD-ALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIE 71
Query: 223 XXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 402
V+THLRNMIIVPEM+GS++G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 72 APAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 131
Query: 403 KHGRPGIGATHSSRFIPLK 459
KHGRPG+GAT+SSRFIPLK
Sbjct: 132 KHGRPGVGATNSSRFIPLK 150
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 163 bits (396), Expect = 7e-41
Identities = 81/139 (58%), Positives = 96/139 (69%)
Frame = +1
Query: 43 RKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXXX 222
+K F S G + + L M E L++ GL RKPMAL+KKLR+
Sbjct: 12 KKRTFKKFSFRGVDLD-ALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKME 70
Query: 223 XXXXXXXXIVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPV 402
V+THLRNMIIVPEM+GSI+G+YNGKTFNQVEIKPEMIGHYL EFS++YKPV
Sbjct: 71 APAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV 130
Query: 403 KHGRPGIGATHSSRFIPLK 459
KHGRPG+GAT+SSRFIPLK
Sbjct: 131 KHGRPGVGATNSSRFIPLK 149
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 123 bits (296), Expect = 9e-29
Identities = 68/146 (46%), Positives = 88/146 (60%), Gaps = 6/146 (4%)
Frame = +1
Query: 40 SRKSVFSGSSLTGELISISSLHMPNEQLMELMHXXXXXXXXXGLKRKPMALVKKLRRXXX 219
++K F S G + + L M N L +L + GLK++P+ L+KKLRR
Sbjct: 16 TKKRTFKKFSFRGFNVD-ALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKK 74
Query: 220 XXXXXXXXX--IVKTHLRNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTY 393
+VKTHLRNMIIVPEM+GS+VG++NGK FN++ IKPEMIGHYL EFS+T
Sbjct: 75 EASDENKMKPEVVKTHLRNMIIVPEMIGSVVGVHNGKKFNEIVIKPEMIGHYLAEFSMTC 134
Query: 394 KPVKHGRPGIGA----THSSRFIPLK 459
K V H RP I S+RFIPL+
Sbjct: 135 KKVNHHRPRICGCCCFRRSTRFIPLR 160
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 47.2 bits (107), Expect = 7e-06
Identities = 23/50 (46%), Positives = 29/50 (58%)
Frame = +1
Query: 265 RNMIIVPEMVGSIVGIYNGKTFNQVEIKPEMIGHYLGEFSVTYKPVKHGR 414
R I+PE V S V IYNGKT + +I +GH GEF+ T K KH +
Sbjct: 161 RRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFGEFAFTRKVKKHAK 210
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 45 KKRIFRKFTYRGVDLDQLL 101
KKRIF+KF++RGVDLD LL
Sbjct: 12 KKRIFKKFSFRGVDLDALL 30
>At5g17370.1 68418.m02036 WD-40 repeat family protein contains 1
significant, 2 weak WD-40 repeats (PF00400); similar to
transducin beta-like 1 protein.(SP:O60907) [Homo
sapiens]
Length = 467
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 343 IKPEMIGHYLGEFSVTYKPVKHGRPGIGATHSSR 444
+KPE+ G Y E Y P+K PG ++ SSR
Sbjct: 20 MKPELPGFYYDEEKNRYFPIKGPIPGAKSSSSSR 53
>At5g26717.1 68418.m03160 hypothetical protein
Length = 141
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 15 NMAEVDETLKKKRIFRKFTYRGVDLDQLLAYAQ*ATHGINAC 140
N + +D+T+KKK + RK T + L+A A G+ AC
Sbjct: 44 NTSRIDQTIKKKSLKRKMTGNMYKMMMLMALIMMAC-GLQAC 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,470
Number of Sequences: 28952
Number of extensions: 189206
Number of successful extensions: 465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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